Nov2008 ontology report
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Ontology Development & GO Editorial Office Report - November 2008
I. Ontology Development
- SourceForge
- Items opened: 64
- Items closed: 77
- GO Eds: 46
- MOD curators: 14 (details in Appendix 1)
- GO Ed/MOD collaborations: 17 (details in Appendix 2)
- Items still open: 253
- assigned, GO Eds: 75
- assigned, MOD curators: 84
- unassigned: 94
- Content items resolved
- Several SourceForge items resolved
- Content items in progress
- New: Work has begun on cross-products within GO -- see Category:Internal_Cross_Products and Editors_cross-product_implementation_plan (David, Midori, Jane, Jen, Chris)
- New: Work on virus-related terms initiated (Jane, Michelle, Candace, Ariane Toussaint, Brenley McIntosh)
- Continuing work on processes affecting cellular components (Jane, David, Midori, Val, et al.)
- Signal transduction overhaul continuing; latest notes at Signaling_Meeting_Minutes_April_2008_- (Jen, David)
- Function-process links for electron transport, metabolic pathways - presented at GOC (Jen, Harold, et al.; for electron transport see Electron_transport_mf-bp_Sept_2007_onwards.)
- Quality control reports generated by Chris
- Regulation (David, Tanya)
- Multiple part_of parents (several GO curators, especially Tanya & David)
- Various SourceForge items
See monthly report in CVS for ontology statistics.
II. GO Editorial Office activities not represented in part I
- Amelia at Berkeley
- OBO-Edit working group:
- Lots of OBO-Edit 2 testing -- list of testing tasks for 2.0 release drafted
- Dictionary additions for OBO-Edit2 spell checking released (Jen)
- Improved Tree Viewer released (Jen)
- Advocacy/outreach
- Visit from Hein van der Steen on ATO development (reported to managers; see minutes from Nov. 5 and 19
- Discussions with Ana Barat on cancer and ontologies (Jen, Jane, plus Rachael for GOA)
- Usual gohelp traffic
- Publications
- PAMGO manuscript submitted (PAMGO curators, Jane)
- Meetings
- Java web services course (Jen)
- Anything else
- Sabina Leonelli visited to interview GO editors and other curators
- IMG mapping resumed (Jane)
- Developing teaching materials for a Java programming course to be run at the EBI in January (Jen, with EBI programmers and training staff)
- GO bibliography has 2296 entries
Appendix 1: MOD curators' SF items 1998775 Alex, David, Tanya 2097052 David 2100260 Tanya & David 2129906 Tanya, David, Ruth 2174782 Tanya & David 2191743 Tanya & David 2204363 David, Susan 2220109 Tanya & David 2234901 Tanya & David 2237362 Tanya & David 2314971 Tanya & David 2315019 Tanya & David 2315763 David 2339392 Tanya & David Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved 1645340 Maria 1733770 CC organization wg 1811126 Karen C, Harold, Jodi 1835495 Tanya 1929532 Tanya & David 1977434 Val 2094844 Rachael, Debby, community expert Michael Melkonian 2100763 Karen C, Rama, Val 2105604 Tanya & David 2140895 Tanya & David 2145073 Chris 2226623 Maria 2230375 Alex, Ruth 2234277 Alex 2234713 Alex, David 2255163 Alex, Tanya, David 2263304 PAMGO curators (Note: "MOD curator" is shorthand for any non-GO-Ed curator)