OEWG 20090217

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OBO-Edit Working Group, Tuesday February 17th, 2008 9.30 a.m. PST

Conference call details:
US: 1-888-727-6732
Outside US: 1-719-867-3417
pin: 601425

Agenda/Chair: Amina
Minutes: Harold
Attendees: Amina, Harold, Karen, Jen, Midori, and Tanya

Action items carried over

  • User defined dictionary not recognized - Fixed
  • Logging Issues - Fixed
  • Java helpbreeze documentation software - old exe for Windows/ demo version use.

Tracker items to be reviewed by the Working Group:


Changes appear in text editor but not in tree editor; This may be
platform dependent as it works on one machine but not another; this might 
be fixed in Beta 55


A question of which reasoner to use; "rules-based" seems to take too
long. Amina thinks this might be fixed in Beta 55

Discussion items

  • All working group members: Testing Update
It is evident that using the reasoner for such queries yields more accurate 
results. The real problem here is the search with no reasoner returning 
absurd results.
    • For searches on <any type> corresponding <Show All - Ancestors or Descendants> reasoning not required. Specific relations queries should provide reasoned results.
      All agreed that this should not be requiring the reasoner. 
  • Provide only transitive relations as an option while showing/searching for relations of type in Graph Editor and Search Panel.
    It was decided to leave it the way it is now. Other suggestion was to

default to transitive only, but have option to show everything. May be useful to show "regulates" (not transitive), but confusing to show "disjoint" (not transitive).

  • Graph Viewer Problem
Priority upgraded to 6. Does not show to root unless forced even if in 
"show all" panel.

Action Items

  • Feb 24th: make a decision as to making a March release of OE2
  • Obomerge needs testing and or fixing. The "consider" and "replace" tags appear to get lost on merge.
  • Graphviewer problem (above) to be addressed


Back to OEWG Meeting agenda and minutes List