Oct2008 ontology report
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Ontology Development & GO Editorial Office Report - September 2008
I. Ontology Development
- SourceForge
- Items opened: 63
- Items closed: 55
- GO Eds: 20
- MOD curators: 30 (details in Appendix 1)
- GO Ed/MOD collaborations: 5 (details in Appendix 2)
- Items still open: 266
- assigned, GO Eds: 79
- assigned, MOD curators: 79
- unassigned: 108
- Preparation for, and presentations at, GO Consortium and SAB meetings
- Content items resolved
- additions (Jane, with PAMGO curators, and Chris for QC xps)
- Several SourceForge items resolved
- Content items in progress
- Continuing work on processes affecting cellular components - briefly presented at GOC meeting (Jane, David, Midori, Val, et al.)
- Signal transduction overhaul continuing; latest notes at Signaling_Meeting_Minutes_April_2008_-#October_2008; high-level terms proposed and agreed at GOC meeting (Jen, David)
- File of triggers for annotation QC - testing with GOA presented at GOC, and implementation agreed; see taxon links (Jen, Chris)
- Function-process links for electron transport, metabolic pathways - presented at GOC (Jen, Harold, et al.; for electron transport see Electron_transport_mf-bp_Sept_2007_onwards.)
- Quality control reports generated by Chris
- Regulation (David, Tanya)
- Multiple part_of parents (several GO curators, especially Tanya & David)
- Various SourceForge items
See monthly report in CVS for ontology statistics.
II. GO Editorial Office activities not represented in part I
- Amelia at Berkeley
- OBO-Edit working group:
- OBO-Edit 2 testing and documentation
- Dictionary additions for OBO-Edit2 spell checking (Jen; more details available)
- Additional work on Tree Viewer (Jen; more details available)
- Advocacy/outreach
- Usual gohelp traffic
- Meetings
- Reference Genome virtual jamboree, and preparatory meeting among UK-based curators (Jen represented ontology developers
- GO Consortium and SAB meetings
- Anything else
- GO bibliography has 2170 entries
Appendix 1: MOD curators' SF items 1860343 Tanya, David 1860367 Tanya, David 2065221 Donghui 2076051 David 2113023 Donghui 2113026 Donghui 2113030 Donghui 2113037 Donghui 2119116 David 2119766 Donghui 2123653 Donghui 212735 Tanya 2140197 Tanya, David 2140746 Tanya, David 2142740 David, Alex 2144049 Tanya, David 2150097 Donghui 2152211 David 2164482 Tanya, David 2164486 Tanya, David 2166465 Tanya, David 2166645 Tanya, David 2166830 Donghui 2166838 Donghui 2166858 Donghui 2166889 Donghui 2166902 Donghui 2182406 Tanya, David 2186463 Alex 2211994 David Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved 2019051 Chris 2078035 Karen C, Val 2092506 Alex 2164199 Julie 2174389 Colin (Note: "MOD curator" is shorthand for any non-GO-Ed curator)