Ontology Development progress report for November 2011
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Ontology Development Progress Report
GOC Meeting Nov 2011
Prepared and Submitted by Jane Lomax
Personnel
- David Hill (MGI)
- Tanya Berardini (TAIR)
- Karen Christie (SGD)
- Harold Drabkin (MGI)
- Becky Foulger (EBI)
- Amelia Ireland (MGI)
- Jane Lomax (EBI)
- Chris Mungall (LBL)
- Paola Roncaglia (EBI)
Ontology Editing
SourceForge Requests (Paola, Becky, Jane and rest of team):
SF items opened (SF items closed) 2011-11-01 72 (28) 2011-10-01 76 (85) 2011-09-01 75 (87) 2011-08-01 88 (209) 2011-07-01 89 (191) 2011-06-01 92 (79) 2011-05-01 84 (83)
Term Statistics
Total number of GO terms added June 2011 to Nov 2011 (inclusive): 2620 Total number of GO terms obsoleted June 2011 to Nov 2011 (inclusive): 44
TermGenie (Tanya)
Around 500 new terms added via this mechanism in this period. Several new templates added including
Major Projects
Transcription overhaul (Karen, David):
Project completed. Some ongoing improvements (Karen and David)
Kidney Development (Becky, David, Doug, Emily, Midori, Rachael, Susan with Yasmin, community experts)
Paper under final review.
Apoptosis (Paola, Becky, Emily, Ruth, and community experts)
Caspase terms phase I done (Paola and Pablo) Top-level term structure almost finalized (Paola, Pablo and community experts)
Chemicals in GO (Amelia, Chris, David, Harold, Jane, Midori, Tanya)
Meeting between GO and CHEBI to resolve final details of alignment (Nov 9, UCL) GOCHE checked and correct (David, Tanya) Paper almost ready for submission (Chris, David, Harold, Jane, Midori, Tanya, Becky, Paola, ChEBI staff and Mike Bada)
Cardiac Conduction
First meeting at UCL 10-11 Nov
Internal logical definitions
biological processes that occur in cellular components - reviewed and added to live GO
Signaling (Becky, Ruth, Sandra, Varsha, Alex, Peter, Susan and community experts
Added ligand binding HAS_PART relationships to receptors (Becky) Cleaned up receptors that aren't functions (Becky)
Viral work (Becky, Jane and curators from SIB)
Draft term structure nearly complete