Ontology meeting 2018-09-17
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Conference Line
Agenda
Editors Discussion
Do we want to have someone run Docker and regenerate the anatomy import on the call? The documentation is here: http://wiki.geneontology.org/index.php/Adding_Terms_and_Regenerating_the_Import_Files
Meetings
Montreal GOC Meeting
- Add name to attendees list if you're going
Ontology Developers' workshop
The meeting will be in Geneva December (8)9-13
- When to book flights and hotel?
Topics
- Filling in missing GO-Rhea-Reactome xrefs
- moving from reactions to biochemical pathways
- implementation of a method to keep in synch with all three resources
- GO-CAM templates for pathways??
- GH ticket work and mini-project planning
- Dealing with and migrating binding terms
- Dealing with cellular processes (https://github.com/geneontology/go-ontology/issues/12849)
- Taxon constaints- How do we handle them going forward?
- Attendees
- David H (Can make it)
- Kimberly (Can make it)
- Karen (can NOT make it)
- Harold (Can make it)
- Pascale (Can make it)
- Barbara (Maybe make it)
- Alan B (Rhea, can make any day)
- Anne (Rhea, prefers Monday or Tuesday)
- Chris
- Peter D (Can make it)
- Ben?
- Jim?
- Paul T (Can make it)
GH project link
https://github.com/geneontology/go-ontology/projects/1
Minutes
- On call: Chris, David, Eric, Jim, Karen, Kimberly, Laurent-Philippe, Pascale, Peter, Tanya
Upcoming Meetings
Montreal
- Add name to attendees list if you haven't already
Geneva
GO-Rhea-Reactome Alignment
- Will work with Rhea group to align GO-Reactome-Rhea
- How best to coordinate with software group?
- Chris recommends doing as much upfront work as possible
- these xrefs can go stale - what should our SOP be for keeping them up-to-date?
- xrefs could be injected as part of the ontology file pipeline and don't necessarily need to be stored in go-edit.obo
- with every Reactome release, there would be an updated set of xrefs to GO and GO could then update their ontology file
- Reactome does try to make the most granular xrefs to GO at the time of curation; but some xrefs will still be multi-valued
- AI: Create a dataflow diagram. (Chris)