Ontology meeting 2018-10-22

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Conference Line



Ontology Developers' workshop

Fall 2018 ontology editors meeting - potential agenda topics

  • Airfare from BGR to Geneva searched on Monday Oct 22. Main cabin on American $1379, leaving from Boston is the same.

Montreal GOC Meeting

  • Recap of the Montreal Meeting


  • On call: Barbara, Ben, Chris, David, Harold, Jim, Kimberly, Pascale, Paul, Peter, Tanya

Geneva Meeting

  • December 10th - 13th, 2018
  • Send flight requests to Lourdes

Taxon Constraints

  • https://github.com/geneontology/go-ontology/pull/16508
  • Will no longer be managed in Protege
  • Will be managed similarly to imports
  • There will be a tsv file to edit
  • Once edited, the taxon constraints will need to be added by regenerating the imported file.
  • Inferred taxon constraints are not visible over the ontology in Protege.
  • Would it also be useful, for each term, to list from what terms a term in the ontology inherits its taxon constraints?
  • AI: Update the documentation on editing the taxon constraints file.

TermGenie Replacment

  • Could the INCA tool be used for at least some of the functionality?
  • For example, X metabolic process-type terms?
  • Will explore possible replacement workflows
  • Tanya promises not to bring up this topic again