Ontology meeting 2022-08-22

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  • Group members: Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul
  • Present: Pascale, Karen, Harold, Raymond, Jim, Tanya, David, Chris
  • Regrets: Kimberly, Paul, Peter

Editors discussion items

GO Design Patterns summer camp


Sep. 6–9

Aligning GO and EC (or RHEA, or any other ontology)

https://github.com/geneontology/go-ontology/issues/23829#issuecomment-1216214500 The GO guidelines state that we do not create terms for substrates, for example GO:0102113 hypoxia-inducible factor-asparagine oxygenase activity would be out of scope and should be merged into GO:0036140 peptidyl-asparagine 3-dioxygenase activity

chorion micropyle formation

Opened by Chris - what is the action? https://github.com/geneontology/go-ontology/issues/22603

Stem cell taxonomic range


NTR - CC or BPs with single papers

See https://github.com/geneontology/go-ontology/issues/23835 Should we wait for confirmation by other papers before creating new terms?

Follow up on previous discussion topics

Regulation of a process in another organism

  • AI (Pascale) should create a new triad of relations for linking the modulation of a process in another organism- for eg, modulates process in another organism (something along these lines)
  • AI (Pascale) Open a RO ticket to make in_taxon over regulates transitive

Next jamboree

Date & topic

For a future call/project