Ontology meeting 2022-11-14
- Group members: Pascale, Harold, Raymond, Val, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul
- Present: Pascale, Harold, Raymond, Val, Jim, Karen, Kimberly, David, Paul
- Regrets: Peter, Tanya, Chris
Editors discussion items
Design patterns doc
https://docs.google.com/document/d/1cmcMbXmEY3Ko1emGZX3Gd6ttDi9_iQB2fLAprLD3aGI/edit#
Tickets by ontology editors
Neutral amino acid transporter
Harold https://github.com/geneontology/go-ontology/issues/24323 'Neutral amino acid' is not in CHEBI - neither is 'acidic or basic' - so these need to be asserted manually, or we could get rid of the distinction. The distinction can be useful as it sometimes corresponds to the specificity of the activity.
nociception
Raymond https://github.com/geneontology/go-ontology/issues/24277#issuecomment-1306529757
Following up on prevous items
Design patterns
NAD, NADH, NADPH processes logical definitions inconsistencies
Jim https://github.com/geneontology/go-ontology/issues/24279
regulation of pH
Jim https://github.com/geneontology/go-ontology/pull/24256/files
cell morphogenesis
Causing DP issues: https://github.com/geneontology/go-ontology/issues/24299
Could we say that for cells, morphogenesis is the same as differentiation?