Ontology meeting 2023-01-23

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  • Group members: Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul
  • Present: Pascale, Harold, Raymond, Val, Edith, Jim, Tanya, Karen, Kimberly, Chris, Peter, Paul
  • Regrets: David

Editors discussion items

New file for some MF terms

  • src/ontology/imports/go-catalytic-activities-participants.owl

Need to edit the file when obsoleting MFs that are part of this file - see for example: https://github.com/geneontology/go-ontology/pull/24613/commits/a8f04973219e91f7742bf2df8c84655305f65701

Consider moving taxon constraints back into ontology

Jim, See https://github.com/geneontology/go-ontology/issues/24490

Is hormone secretion intended only for endocrine, or includes other types

https://github.com/geneontology/go-ontology/issues/17084 Question by David OS: Hi @raymond91125 Once GO PR is merged with the general term - the next question is, will GO is happy to add endocrine hormone secretion terms for specific endocrine hormones. IF so, CL can provide a list of the ones we need. We'd prefer this solution, but if not, just let us know and we'll handle the formalisation on our side.

Using GOCHE roles

See https://github.com/geneontology/go-ontology/pull/24473

Update missing MetaCyc2GO mappings for SGD YeastPathways

Jim, Chris https://github.com/geneontology/go-ontology/issues/24597

Bulk updates

Adding MetaCyc xrefs in the ontology


Obsoleting large sets of terms

Obsolete BPs "regulation MF"


Tickets by ontology editors