Ontology meeting 2023-02-27

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  • Group members: Pascale, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul
  • Present:
  • Regrets:


GOC consortium

  • April 27th-29th, Padua, Italy
  • If you plan to attend, please register ASAP.


password: goc2023

New Protege version

  • Plan: Jim to make a new Instruction page - Pascale to test

Script to download annotations

Editors discussion items

Behavioral and neuronal processes


Phagocytosis versus endocytsosis

Asserted classes versus logical definitions

Example: mRNA phosphatase activity is_a pyrophosphatase, not a phosphatase

Procedure to mark terms to be obsoleted

  • This would give curators and editors of ontologies using GO a way to know which terms are scheduled for obsoletion
  • There is a property that we can use

Test new process to when obsoleting terms with taxon constraints

  • Use GH actions ? Pascale to test

https://github.com/geneontology/go-ontology/issues/24489 https://github.com/geneontology/go-ontology/issues/24490

GO, RHEA, EC aligment

Tickets by ontology editors