Projects stand up meeting 2021-03-17

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  • Present: David, Kimberly, Pascale, Seth, Suzi, Paul, Chris + Peter, Dustin
  • Regrets:
  • Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris

Projects presentation


  • Next deliverables + expected date
  • Progress
  • Issues / blockers

March GO release

Depends on GAF2.2 migration

GAF2.2 migration status

Pathways2GO manuscript

MGI, WB, ZFIN loads

  • MGI
    • loosing some annotations - Dustin to fix the script to make sure metadata (comments) is loaded
    • regulation of biological quality annotations not being loaded. Dustin will query and send a report. About 60 annotations missing

-> MGI is very close from being finished. -> MGI will have a 'drop and reload' mechanism -> Next 'project' is for GOC to turn MGI GPAD files from ttl back into GPAD create GPAD files for MGI to be able to import them

  • For eg issue with 'located_in' -> Noctua doesn't use the relations from our latest specs.

  • WB needs to do some more work with Alex and the P2GO file - will do together with SGD to be making most efficient use of Alex's time
    • SGD decided history is not quite as important as they thought it was initially
    • GPAD files still have a few bugs

  • ZFIN essentially done, the plug has been pulled

ART1.0/Noctua3.0 plan

Any other ongoing project

Next sprint