Projects stand up meeting 2021-08-18
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Attendees
- Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris
- Regrets:
- Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris
Announcements
- GOC meeting dates: Oct 13-15 (Wed to Friday)
- Need to make a decision on whether to have an in-person meeting - Michelle thinks U of Baltimore will allow people to come; restrictions are going up everywhere. Possibly a hybrid meeting? Domestically - everyone vaccinated will converge to Baltimore, and zoom everyone else in?
- Decision= Virtual meeting
Discussion points
Taxon constraints
Update - will set up a meeting: Paul, Huaiyu, Jim, Pascale, Chris (who else?) to evaluate tasks and resources needed
Migrating Google Docs to a Google Workspace
Chris will give overview
- right now everyone owns all the contents of the Drive, which makes everyone's GO quota high (maybe too high)
- move is not straightforward: each owner of a doc needs to move it; cannot move in bulk
- do we tie it to a specific institution? need to look into advantages/limitation - and not use up anyone's quota
- For info: instruction to Google Drive by Julie McMurry
Outreach
Discussed open website tickets -
- Gene associations for Tribolium: Suzi/Kimberly
- https://github.com/geneontology/geneontology.github.io/pull/283 -> go_monthly-termdb.rdf-xml.gz
- https://github.com/geneontology/geneontology.github.io/pull/232 -> list of species per annotation file
Still need to be resolved
- Suzi will set up a call
- Paul will update http://geneontology.org/docs/submitting-go-annotations/
Projects update
MOD imports
- GPAD output
- Jim addressed 2 out of the 3 tickets needed for the imports, David and Kimberly made a plan to address the 3rd
- MGI -> waiting for GPAD
- WormBase -> waiting for GPAD and round trip before asking Alex changed to the GPAD export he produces
- XenBase
- SGD (no tickets yet)
- ZFIN -> DONE - still fixing some issues on the ZFIN side WRT import code relative to evidence codes
GOREL file
- Kimberly and Pascale edited the GOREL file to allow P2GO curators to use exist_during (???) +++ so curators can fix their annotations
Release
- Release was waiting for ZFIN data; Seth re-triggered the release last Friday. Release failed earlier today
- There is some issue with the WB ftp; not yet sure if that impacts the release (it would impact if we need to load the data again)
Ontology
Next week: small transcription workshop on co-factors and ATP-dependent functions: Colin, Ruth, Val, Pascale, Helen