Projects stand up meeting 2021-09-22
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Attendees
- Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi,
- Regrets:
- Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris
Announcements
- GOC meeting Tuesday Oct 12 to Thursday Oct 14, 2021
- Registration:
- Zoom, zoom chat, slack,
- Agenda: https://docs.google.com/document/d/15_TIWfnu2X_3CVzdcou14PyV4Ff8F9Hz8WSASi1bsaE/edit
Discussion points
Removing regulates closure in AmiGO
To be consistent with PAINT and within the consortium See https://github.com/geneontology/amigo/issues/620
NOTE that in Noctua, all regulation annotations get an annotation to 'acts upstream of' the process it regulates, so even if remove the regulates closure, these will 'come back' via the inferred annotations: https://github.com/geneontology/minerva/issues/394
Projects update
MOD imports
From last meeting:
- 2 / 3 tickets are solved on dev, can go to production
- 3rd ticket should be easy to fix
- Issue with annotations based on PRO isoforms, some annotations are not coming out (blocking)
- Otherwise things look good
- MGI
From last meeting:
- Next is for Lori to load and check that all is OK on MGI's side
- WormBase
From last meeting: -> waiting for GPAD and round trip before asking Alex changed to the GPAD export he produces
- First imported WB annotations, look good -> these can go into production, WB will pick these up from the GPAD output
- Next: import from P2GO; will probably need fine tuning with Alex, testing WB + SGD, and maybe Dustin will need to adjust some code
- Delivery: estimate weeks - or by the end of this year
- XenBase
- SGD (no tickets yet)