Projects stand up meeting 2021-09-22

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  • Present: David, Huaiyu, Kimberly, Pascale, Seth, Suzi,
  • Regrets:
  • Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris


Discussion points

Removing regulates closure in AmiGO

To be consistent with PAINT and within the consortium See

NOTE that in Noctua, all regulation annotations get an annotation to 'acts upstream of' the process it regulates, so even if remove the regulates closure, these will 'come back' via the inferred annotations:

Projects update

MOD imports

From last meeting:

    • 2 / 3 tickets are solved on dev, can go to production
    • 3rd ticket should be easy to fix
    • Issue with annotations based on PRO isoforms, some annotations are not coming out (blocking)
    • Otherwise things look good
  • MGI

From last meeting:

    • Next is for Lori to load and check that all is OK on MGI's side
  • WormBase

From last meeting: -> waiting for GPAD and round trip before asking Alex changed to the GPAD export he produces

    • First imported WB annotations, look good -> these can go into production, WB will pick these up from the GPAD output
    • Next: import from P2GO; will probably need fine tuning with Alex, testing WB + SGD, and maybe Dustin will need to adjust some code
      • Delivery: estimate weeks - or by the end of this year
  • XenBase
  • SGD (no tickets yet)

Other priorities