Projects stand up meeting 2021-12-08

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Attendees

  • Present: Kimberly, Pascale, Seth, Suzi, Paul, David, Cynthia, Chris
  • Regrets:
  • Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia

Announcements

2021 progress reports

Year-end report

Not needed now as this is the last year of the current grant cycle.

  • We will, however, need to create an end-of-grant report due in May 2022.

No GO calls next week

This applies to managers and all other GO calls: Do people want to have a call on Dec 22 (Kimberly is off)? Or should we wait after the holidays? Pascale & David are off the week of January 3rd; should we start on the week of January 10th, and skip the no-GO calls week for January?

Priorities & objectives for next grant cycle

2h meeting, either Jan 19, 26 or Feb 2 - please fill Doodle: https://doodle.com/poll/hqc9dy3xit3anydp

Discussion points

minerva tracker jamboree

  • Tuesday, December 14th, ~2-5pm EDT
  • Goal: to close any minerva tickets we can and then assess what's left and how to approach the work


Model copy status

Paul and Pascale will meet with Swiss-Prot next Tuesday, they asked what the status was with Model Copy, see https://github.com/geneontology/noctua/issues/606

Multi-species GAFs

  • Some groups may submit annotations for multiple species even though they may not be considered the 'canonical' source for that species
  • TAIR/Phoenix would like to submit annotations for Chlamydomonas reinhardtii and Zea mays in a GAF that they produce
  • Is GO okay with this kind of data flow?
  • An alternative would be to have GOA pick up the annotations and have them flow to GO via the UniProt all file

Loading Swiss-Prot entries into NEO

Where is this stalled? Do we just need a GPI from Alex? See https://github.com/geneontology/noctua/issues/471 and https://github.com/geneontology/neo/issues/24 Alex can generate a GPI for all Swiss-Prot, it would contain 500k entries. Are we able to load that? Do we need to assign resources to this/make this a project?

Offboarding document

https://docs.google.com/document/d/1UOu3fjD8isodl6HuhOcV5yrUeWAGI71Uam-x2ew9MvM/edit

Suzi will give feedback

  • Almost ready to be put on the wiki

Some project allocation/reprioritization?

Running into some issues with server migration that is affecting GO-CAM services.

Current issues: https://github.com/geneontology/api-gorest/issues/3 https://github.com/geneontology/api-gorest/issues/4

Other proposals: https://github.com/geneontology/noctua/issues/744

  • Need Dustin, Tremayne and Jim over the next week approx

Any blocking issues on ongoing projects?

  • Taxon ID without label #388
    • Patrick has made some production SARS-CoV-2 models but they are not browsable or searchable by 'organism'
    • Update taxslim for go-lego? Other approaches? Who can do this?

PIs on projects

https://github.com/orgs/geneontology/projects


GOC meeting follow up