Projects update meeting 2023-10-11

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Attendees

  • Members: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Chris, Cynthia
  • Present:
  • Regrets:

Announcements

  • GOC meeting: October 17-19, 2023
    • Review and finalize agenda: Draft agenda
    • ISB is having a 1.5h session on the 18th

Administrative points

  • Is this call moving to every other week or the second and fourth weeks of the month? In the past the Reactome2GO project-wide call was during this time slot on the no-GO calls weeks.

Feedback request

Proposal: need more information in GPI

Starting proposal to add to GPI: https://github.com/geneontology/project-management/issues/83

Meeting notes: https://docs.google.com/document/d/1GXSKLKWJMNZmUOBbuMhgvPf4WCjDaKLCooOcUF0UMoE/edit

  • Noting some feedback from ZFIN curators: they can manually update obsolete gene ids in models (they did a trial run on noctua-dev), but noted that they will also need to be changing the model titles when those titles now refer to obsolete gene ids. We will need to think about also doing the latter when we get to the point when we're handling these updates computationally.

Recently closed projects

Active projects

https://github.com/orgs/geneontology/projects/108/views/1

  • Yeast pathways
    • Completion was planned for mid-August
    • PO: Suzi
    • After 2023-09-28 Noctua update, work remaining will be SGD curation of errors in models
  • Integrate MGI remainders
    • PO: David
    • Resources: Seth, Sierra, Lori, (Dustin)
      • Requires updated GPAD file for Lori to test (Oct 17)
      • Currently working on human ISO annotations, QCing Lori's file versus Sierra's file I found some bugs
      • Various team members have been traveling. David out Oct 10-13 at Reactome2GO meeting.

Upcoming projects

Noctua/GO-CAM working group (feedback on current curation system)

    • PO: Kimberly
    • I need feedback from GO managers and PIs on how to proceed with this project
    • Resources: ?
    • Start with 1-2 meetings of a subset of GO managers (David, Kimberly, Pascale, Seth, Suzi) to scope overall project and provide some structure for wider participation and future meetings

Projects updates

https://github.com/orgs/geneontology/projects/108