Projects update meeting 2024-02-28
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Attendees
- Members: Kimberly, Pascale, Seth, Suzi, Jim, Huaiyu, Paul, Chris, Cynthia
- Present:
Discussion topics
GO meeting
- Registration form by March 15th
- Agenda by May 1st
Update on projects
SGD Noctua migration
MGI remainders
- GAF/GPAD and Isoforms
- Questions:
- Which ‘upstream annotations’ are converted from PR to MGI identifiers?
- Possible approaches:
- Do nothing, i.e. MGI will lose the information about isoforms as annotated entities in the GPAD
- Modify the current pipeline so that the information in Column 17 in the GAF is used to populated Column 1 in the GPAD - this sounds like Sierra’s suggested approach
- Update the GPAD specification to include a new column that would be the equivalent of Column 17 in the GAF
- Include a structured property in the GPAD to indicate the isoform in Column 17 in the GAF
TO DO
- Estimate of how much work is option 1-3
- Decide whether we want to change the GPAD specs to have the gene identifier in Col1