QCQA call 2018-11-20

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GOC meeting Presentation: https://docs.google.com/presentation/d/1Akm-zNZWNXgyNOYZpgmzpzbkr8r9fNUJX8U2Yx5Guo4/edit#slide=id.p

Annotation review: capturing correct annotations

see for example: https://docs.google.com/spreadsheets/d/1AYSL_Lzy-BgmYKwaXyjEIOuSK2gankC1EOtSlCW_Vfo/edit#gid=0

Annotation review - incomplete responses stats

Pascale created new spreadsheet: https://docs.google.com/spreadsheets/d/1eBVWKfpYFBPC--sSiipzakGswFTTNLPgNsiqDH8-keU/edit#gid=0

Annotation review

Separate completed Google spreadsheets by date - see https://drive.google.com/drive/folders/1FDfp4yXlLZjrcB0NIbsAgUukDWDwhJe_

GO rules status

All P2GO rules Tony sent are now formally described in the go-site repository. Discuss possible timeline for implementation ? Meanwhile-> use P2GO reports ?

Annotation from mutant phenotypes

Kimberly improved guidelines: Guidelines (draft) : http://wiki.geneontology.org/index.php/Annotating_from_phenotypes

Action items from the Montreal meeting

Pascale: TO DO: Create tickets

  • Check groupcontacts.csv in go-site/metadata and please update for GO curators in your group [annotation group].
  • Assess where we stand wrt the signaling workshop. What needs to be wrapped up? What are the sticking points and why? How do we capture downstream effects of signaling pathways?
  • Develop guidelines for annotation metrics in light of the increased contribution of annotation review to curator efforts. Consider how prioritization of annotating previously unannotated genes will be taken into account. Include metrics for comprehensive annotations and develop guidelines and a system for flagging genes/gene products as annotation complete (gpi specs) and make this publically available.
  • Suzi - develop a ‘white list’ for specific pathways
  • Review guidelines with curators: http://wiki.geneontology.org/index.php/Tips_to_Produce_High_Quality_Annotations


Topics carried over from previous calls:

Annotation redundancy - non-experimental annotations

Different types of redundancy

There is no use case for users of MODs and AMiGO to see automated annotations when EXP annotations are present. If somebody wants a complete set of annotations from a mapping resource these could be made available separately.