QC procedures from contributing groups

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GOA QC Procedure

EBI (GOA pipeline) filters the following annotations from their files:

  • Annotations with unmapped identifiers: need to be able to map to a UniProt accession (or RNAcentral or ComplexPortal ID) in order to be able to import annotations.
  • Annotations to obsolete GO terms for which no replacement is available
  • Annotations to GO terms that are flagged as do_not_(manually_)annotate
  • Annotations with an invalid combination of evidence code and with/from, as governed by the rules in https://github.com/geneontology/go-site/blob/master/metadata/eco-usage-constraints.yaml
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