SWUG:Report 201003
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AmiGO and GO Database
- New reference genome family-based status reporting
- Loading of panther families
- Refactoring of how xrefs are handled in database
- Database extended to handle col 16 Annotation_Cross_Products
- Database uses reasoner code for populating graph_path table
OBO-Edit
- OE2.0 release
- 2.1betas1-3
- Support for MIREOTing/isa-closure
- Improved obo-owl roundtripping
- Latest Updates: OBO-Edit: v2.1 Release Notes
Software Libraries
Continuing development of go-moose, the object oriented perl library which will replace go-perl and go-db-perl. Includes a reasoner implementation and numerous useful ontology- and annotation-related scripts.
PAINT
Production and Infrastructure
- Database build pipeline streamlining Media:go-infrastructure.ppt
Ontology and Annotation Support
Quality Control
- implemented Ontology Publishing Pipeline - checks for errors before publishing of ontology from editors version
- Taxon constraints pipeline
- GAF Inference from MF->BP
Reactome
- Using cross-products to automate Reactome-GO links