Sep2007 ontology report
Jump to navigation
Jump to search
Ontology Development & GO Editorial Office Report - September 2007
I. Ontology Development
- SourceForge
- Items opened: 49
- Items closed: 49
- GO Eds: 34
- MOD curators: 2 (details in Appendix 1)
- GO Ed/MOD collaborations: 11 (details in Appendix 2)
- Items still open: 269
- assigned, GO Eds: 47
- assigned, MOD curators: 53
- unassigned: 169
- Cardiovascular physiology: Changes will go live when muscle work done (both meetings use file available at go/scratch/gene_ontology_cardio.obo); wiki: http://gocwiki.geneontology.org/index.php/Cardiovascular_physiology/development
- Muscle development: Post-meeting work well under way; timeline on Google calendar; anticipate finishing by end of October (http://wiki.geneontology.org/index.php/Muscle_Development).
- Other content items resolved
- Various small things for SourceForge items
- Other content items in progress
- A bit more progress on sensu terms; plan to deal with last ones in eanest starting in October; see http://gocwiki.geneontology.org/index.php/Meeting_Notes_3
- David has gone through Chris' file of "regulation of non-process" anomalies; in some cases, new process terms are needed, and in other cases regulation terms need to be moved under regulation of molecular function or regulation of biological quality; lists now available on wiki:
- Many synonyms for enzyme activity terms added, derived from EC via Expasy; an update/refinement based on IntEnz is on the way
- Various SourceForge items
See monthly report in CVS for ontology statistics.
II. GO Editorial Office activities not represented in part I
- Jane on maternity leave!
- OBO-Edit working group:
- Additional OBO-Edit 2.0 betas released and tested, including new search/filtering interface
- Software hub group (Jane, Amelia):
- AmiGO working group (Jane, Amelia)
- Continuing development to prepare for next AmiGO 1.0 release
- AmiGO working group (Jane, Amelia)
- Advocacy group (Jane; Jen while Jane is away):
- Slides for general GOC use (continued)
- Usual gohelp traffic
- Annotation outreach to be folded into advocacy/outreach
- SOPs now live
- Conferences/meetings
- GOC meetings! well documented on wiki (http://gocwiki.geneontology.org/index.php/Consortium_Meetings)
- Anything else
- NAR database issue manuscript submitted (accepted Oct. 1)
Appendix 1: MOD curators' SF items 1789569 Harold 1775791 Harold Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved 1723526 Michelle 1724459 Doug 1768067 Pascale, Maria, Chris M 1787665 Colin Batchelor 1779479 David 703326 transport interest group 923627 Sue 1073073 David, Chris M 1428209 Chandra Theesfeld, Waclaw Kusnierczyk 1322405 Alex 1081679 Doug, transport interest group (Note: "MOD curator" is shorthand for any non-GO-Ed curator)