Software and Utilities Report 2006

2006 Progress: Software and Utilities

Media:go-sw-report-2006-cambridge.ppt

Database schema and perl tools

1. incorporated subsets/slims to schema/loading -
2. added code for loading GO.xrf_abs
3. go-db-perl released to CPAN - go-db-perl
4. several go-perl releases - go-perl
5. term enrichment added to go-db-perl API - API Call (demo available via AmiGO2)

Applications

1. AmiGO 1.0 released - see wg report
2. oboedit - see wg report
3. AmiGO 2 prototypes

Ontology development

1. obo-format 1.2 released
2. GO x OBO Cell logical definitions Definitions docs on GO public wiki
3. SO Logical Definitions - 156 Genus-differentia definitions
4. regulation cross-products - see Media:Regulation-xp.ppt