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Combined display of all available logs of GO Wiki. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 02:42, 21 September 2023 Pascale talk contribs created page Projects update meeting 2023-09-27 (Created page with "= Attendees = * Members: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Chris, Cynthia * Present: =Announcements= * GOC meeting: October 17-19, 2023 ** [https://docs.google.com/document/d/18ipImQU4_NnJ2iiw88Gwa4BTargC4cPBteyHF2RFR_M/edit Draft agenda] ** ISB is having a 1.5h session on the 18th * SAB meeting: November 7th, 2023 * Next week is the no GO calls week = Feedback request = == Proposal: need more information in GPI == Starting proposal to add t...")
• 08:35, 20 September 2023 Pascale talk contribs created page Ontology meeting 2023-09-25 (Created page with "* '''Group members:''' Pascale, Raymond, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' * '''Regrets:''' =Discussion points= ==Usage of 'has input' versus 'has primary input'== We wanted to decide whether to switch in the ontology all ‘has input’ for ‘has primary input’ (as appropriate). I have made a table of ‘pros and cons’ for the two options, see: https://docs.google.com/spreadsheets/d/1tYXUa8RhnihwOVCokpgvARobZ9CmCHCvWrV...")
• 14:20, 18 September 2023 Vanaukenk talk contribs created page Annotation Conf. Call 2023-09-19 (Created page with "= Agenda and Minutes = == Meetings and Announcements == === Noctua === * Next regularly scheduled Noctua outage: ** Thursday, September 28th, 4-6pm PDT *** [https://github.com/geneontology/noctua/issues/843 Outage tasks] * Extended outage coming in early October ** Will re-visit as we get closer to work out exact dates and times === Fall GOC Meeting === * Virtual meeting * October 17th - 19th (Tuesday - Thursday) * October 18th is also a virtual ISB meeting - have a...")
• 07:58, 18 September 2023 Pascale talk contribs deleted page Ontology meeting 2023-09-11 (content was: "* '''Group members:''' Pascale, Raymond, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' * '''Regrets:''' =Precompute inferred taxon constraints and add to ontology release= See https://github.com/geneontology/go-ontology/issues/19759 =[https://github.com/geneontology/go-ontology/issues/21211 Odd parent - child relationships for binding MF terms]=...", and the only contributor was "Pascale" (talk))
• 07:56, 18 September 2023 Pascale talk contribs created page Ontology meeting 2023-09-18 (Created page with "* '''Group members:''' Pascale, Raymond, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' * '''Regrets:''' =Precompute inferred taxon constraints and add to ontology release= See https://github.com/geneontology/go-ontology/issues/19759 =[https://github.com/geneontology/go-ontology/issues/21211 Odd parent - child relationships for binding MF terms]= Edith =Has_part guidelines= =Protein complex guidelines= * Protein_complexes * Versi...")
• 03:38, 13 September 2023 Pascale talk contribs deleted page Category:Protein Complex (content was: "All things protein complex.", and the only contributor was "Gail" (talk))
• 03:32, 13 September 2023 Pascale talk contribs created page Category:Archived file formats (Created page with "This category groups pages discussion retired file formats. Current documentation is on GitHub and on the main GO website.")
• 03:28, 13 September 2023 Pascale talk contribs created page Category:Archived annotation (Created page with "This category groups pages for meetings, workshops and general notes of discussions of specific annotation topics.")
• 12:51, 12 September 2023 Mi talk contribs created page 20 September 2023 PAINT Conference Call (Created page with "==Present== ==Agenda== ===PANTHER17 tree review=== Here is the [https://docs.google.com/spreadsheets/d/1fYPOdrtXvhoaCJN0ZA-SeZP4zogH%20CEuD79xWAjV5p4/edit spreadsheet] with missing human IBAs between v.15 and v.17. Missing annotations can be due to multiple reasons. A common one is the replaced GO terms are not used for the obsoleted term. ===Shortening the cycle between new experimental annotations and PAINT=== Currently, once new experimental annotations are rele...")
• 03:40, 12 September 2023 Pascale talk contribs deleted page Creating new GO terms (content was: " Category:OntologyCategory:GO Editors", and the only contributor was "Pascale" (talk))
• 10:55, 11 September 2023 Jamesbalhoff talk contribs created page Molecular Function reaction participants (Created page with "Molecular functions with Rhea xrefs are automatically linked to ChEBI terms identifying the chemicals participating in the reaction. The ChEBI participants are extracted from data provided by Rhea. The generated file is imported into go-edit.obo and merged into the go-plus.owl release. It can be viewed on GitHub here: * https://github.com/geneontology/go-ontology/blob/master/src/ontology/imports/go-catalytic-activities-participants.owl * https://github.com/geneontology...")
• 07:05, 7 September 2023 Pascale talk contribs created page Projects update meeting 2023-09-13 (Created page with "= Attendees = * Members: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Chris, Cynthia * Present: * Regrets: =Announcements= * GOC meeting: October 17-19, 2023 * SAB meeting: November 7th, 2023 * Going to 1 meeting every 2 weeks>> no meeting next week =Active projects= https://github.com/orgs/geneontology/projects/108/views/1 How close are we to closing these projects? * [https://github.com/geneontology/project-management/issues/14 GO API refactor] ** Nee...")
• 09:45, 5 September 2023 Vanaukenk talk contribs created page Noctua to Standard Annotation Conversion Table (Created page with "= Noctua to Standard Annotation Conversion Table (work in progress) = <span style="color:red">In Google doc for now: https://docs.google.com/spreadsheets/d/1vkBVTyUg1tjipUtYGan5Ob0vE14H_j6O-PuTH9619eg/edit#gid=0</span> {| class="wikitable" !colspan="9"| Molecular Function |- !rowspan="2"| Link !rowspan="2"| Curation Statement !rowspan="2"| Allowed values (range) !colspan="2"| GO-CAM !colspan="4"| GPAD Output |- !rowspan="1"| GO-CAM relation !rowspan="1"| GO-CA...")
• 10:04, 31 August 2023 Pascale talk contribs created page Ontology meeting 2023-09-11 (Created page with "* '''Group members:''' Pascale, Raymond, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' * '''Regrets:''' =Tickets to discuss= Following up on * [https://github.com/geneontology/go-ontology/issues/25933 Cell cell-signaling terms] Request was to ** Replace "epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification GO:0060802, with *** Single EXP to PMID:14511481 ** Replace "cerebellar Purkinje...")
• 14:27, 28 August 2023 Vanaukenk talk contribs created page Annotation Conf. Call 2023-08-29 (Created page with "= Agenda and Minutes = == Meetings and Announcements == === Noctua === * Next regularly scheduled Noctua outage: ** Thursday, September 14th, 4-6pm PDT *** [https://github.com/geneontology/noctua/issues/843 Outage tasks] * Extended outage coming in early October ** Will re-visit as we get closer to work out exact dates and times === Fall GOC Meeting === * Virtual meeting * October 17th - 19th (Tuesday - Thursday) * Do you know of external groups that might like to pr...")
• 07:30, 24 August 2023 Pascale talk contribs created page Projects update meeting 2023-08-30 (Created page with "= Attendees = * Members: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim * Present: * Regrets: =Announcements= * GOC meeting: October 17-19, 2023 * SAB meeting: November 7th, 2023 =Upcoming projects= TBD =Project-specific questions= * Use of "GO_Central" for MGI remainders =Projects updates= https://github.com/orgs/geneontology/projects/108")
• 18:35, 22 August 2023 User account Test002 talk contribs was created by Sjcarbon talk contribs
• 18:31, 22 August 2023 User account Test001 talk contribs was created by Sjcarbon talk contribs
• 17:57, 21 August 2023 User account Civihosting talk contribs was created automatically
• 04:15, 21 August 2023 Pascale talk contribs created page Ontology meeting 2023-08-28 (Created page with "* '''Group members:''' Pascale, Raymond, Val, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' * '''Regrets:''' =Tickets to discuss= * [https://github.com/geneontology/go-ontology/issues/25933 Cell cell-signaling terms] ** To replace "epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification GO:0060802, please add: epiblast cell-extraembryonic ectoderm cell signaling *** Single EXP to PMID:14511481...")
• 15:22, 16 August 2023 Sjcarbon talk contribs created page Projects update meeting 2023-08-23 (Created page with "= Attendees = * Present: * Regrets: =Announcements= TBD =Upcoming projects= TBD =Project-specific questions= * Use of "GO_Central" for MGI remainders =Projects updates= https://github.com/orgs/geneontology/projects/108")
• 20:55, 15 August 2023 Sjcarbon talk contribs created page Projects update meeting 2023-08-16 (Created page with "= Attendees = * Present: * Regrets: =Announcements= ... =Upcoming projects= * Clarify actions for Noctua roadmap (Chris and PaulT present) ** [https://docs.google.com/document/d/1I808pPEG06uoNXCM86eGa_t4Ei-JGxRGkRSf1ZSuAA4 Meeting agenda and minutes] =Projects updates= https://github.com/orgs/geneontology/projects/108")
• 15:18, 8 August 2023 Vanaukenk talk contribs created page Annotation Conf. Call 2023-08-15 (Created page with "= Agenda and Minutes = == Meetings and Announcements == === Noctua === * Next regularly scheduled Noctua outage: ** Thursday, August 24th, 4-6pm PDT *** [https://github.com/geneontology/noctua/issues/841 Outage tasks] === Fall GOC Meeting === * Virtual meeting * October 17th - 19th (Tuesday - Thursday) * Do you know of external groups that might like to present their GO-related work? * Think about useful break out sessions == GO Release Pipeline == * July release out...")
• 15:33, 31 July 2023 Sjcarbon talk contribs created page Projects update meeting 2023-08-02 (Created page with "= Attendees = * Present: * Regrets: =Announcements= ... =Upcoming projects= * Need owner/etc for https://github.com/geneontology/project-management/issues/73 * Clarify actions for Noctua roadmap =Projects updates= https://github.com/orgs/geneontology/projects/108")
• 14:33, 31 July 2023 Vanaukenk talk contribs created page Annotation Conf. Call 2023-08-01 (Created page with "= Agenda and Minutes = == Meetings and Announcements == === Noctua === * Next regularly scheduled Noctua outage: ** Thursday, August 10th, 4-6pm PDT *** [https://github.com/geneontology/noctua/issues/841 Outage tasks] === Fall GOC Meeting === * Virtual meeting * October 17th - 19th (Tuesday - Thursday) * Do you know of external groups that might like to present their GO-related work? * Think about useful break out sessions == GO Release Pipeline == * July release in...")
• 12:32, 31 July 2023 Mi talk contribs created page 13 September 2023 PAINT Conference Call (Created page with "==Present== ==Agenda== ===Shortening the cycle between new experimental annotations and PAINT=== Currently, once new experimental annotations are released by GO, it takes up to one month to be visible in PAINT tool. The question is whether the cycle can be shortened. Below are a few ideas. *Snapshot is loaded weekly. *Noctua annotations could be loaded directly. *Literature curation is done directly in PAINT. Category:PAINT")
• 15:03, 24 July 2023 Pascale talk contribs created page Projects update meeting 2023-07-26 (Created page with "= Attendees = * Members: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim * Present: * Regrets: =Announcements= * GOC meeting Oct 17-19th * Any suggestions for outside groups we should invite to give a talk ? =New GO grant= Please remember to cite the new grant in paper!! grant number HG012212 =TreeGrafter = * Will be integrated into InterPro pipeline * is everyone OK using a PMID as the reference? Other IEAs use a GO_REF =clean out old us...")
• 11:07, 20 July 2023 Pascale talk contribs created page Ontology meeting 2023-07-31 (Created page with "* '''Group members:''' Pascale, Raymond, Val, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' * '''Regrets:''' Val =Announcements= Pascale away: * July 31 * Aug 7 (no GO calls week) * Aug 14th ==GO:0000904 'cell morphogenesis involved in differentiation now obsoleted== * https://github.com/geneontology/go-ontology/issues/24299 * Can we now proceed with implementation of the automated inferences of part_of relations? ==Revert to using 'h...")
• 10:18, 19 July 2023 Ruth.lovering talk contribs created page File:MiRNA Decision Tree.pdf
• 10:18, 19 July 2023 Ruth.lovering talk contribs uploaded File:MiRNA Decision Tree.pdf
• 10:14, 19 July 2023 Ruth.lovering talk contribs uploaded a new version of File:MiRNA Decision Tree 2023.pptx
• 10:10, 19 July 2023 Ruth.lovering talk contribs created page File:MiRNA Decision Tree.jpg
• 10:10, 19 July 2023 Ruth.lovering talk contribs uploaded File:MiRNA Decision Tree.jpg
• 10:06, 19 July 2023 Ruth.lovering talk contribs created page File:LncRNA Decision Tree.jpg
• 10:06, 19 July 2023 Ruth.lovering talk contribs uploaded File:LncRNA Decision Tree.jpg
• 09:02, 19 July 2023 Pascale talk contribs created page Projects update meeting 2023-07-19 (Created page with "= Attendees = * Members: Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia, David, Jim * Present: * Regrets: Kimberly =Announcements= * GOC meeting Oct 17-19th * Any suggestions for outside groups we should invite to give a talk ? =New GO grant= Please remember to cite the new grant in paper!! grant number HG012212 = Displaying GO-plus in OLS= AI: Jim will contact the OLS developers to switch to GO-plus after the next release =Review priorities from GOC...")
• 08:10, 19 July 2023 Ruth.lovering talk contribs created page File:LncRNA Decision Tree.pdf
• 08:10, 19 July 2023 Ruth.lovering talk contribs uploaded File:LncRNA Decision Tree.pdf
• 06:28, 19 July 2023 Pascale talk contribs created page LncRNA GO annotation manual (Created page with " Category:Annotation Guidelines")
• 09:08, 18 July 2023 Pascale talk contribs created page Ontology meeting 2023-07-24 (Created page with "* '''Group members:''' Pascale, Raymond, Val, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul * '''Present:''' * '''Regrets:''' =Announcements= Pascale away: * July 31 * Aug 7 (no GO calls week) * Aug 14th =Discussion points= ==Update on ontology maintenance project== https://github.com/orgs/geneontology/projects/135 ==Further improving the efficiency of term obsoletion == These small tweeks: # When we create the annotation files, 4 files are not crea...")
• 16:09, 17 July 2023 Vanaukenk talk contribs created page Annotation Conf. Call 2023-07-18 (Created page with "= Agenda and Minutes = == Meetings and Announcements == === Noctua === * Next regularly scheduled Noctua outage: ** Thursday, July 20th, 4-6pm PDT *** [https://github.com/geneontology/noctua/issues/834 Outage tasks] === Fall GOC Meeting === * Virtual meeting * October 17th - 19th (Tuesday - Thursday) * Do you know of external groups that might like to present their GO-related work? == GO Release Pipeline == * June release out June 11th * No July release at this point...")
• 03:19, 15 July 2023 Valwood talk contribs created page Ontology meeting 2023-07-17 (Created page with " Suggested item. Further improving the efficiency of term obsoletion. These small tweeks: 1. When we create the annotation files, 4 files are not created and we need to look at them all to see if they have any contents. Is it possible to not create the file if there are no annotations? 2. We still need to create a lot of tickets for the obsoletion, and then do the e-mail. Can we think of any other ways to streamline further?")
• 11:38, 12 July 2023 Hla28 talk contribs uploaded a new version of File:MiRNA Annotation Decision Tree 2023.png
• 11:35, 12 July 2023 Hla28 talk contribs reverted File:MiRNA Annotation Decision Tree 2023.png to an old version (Reverted to version as of 09:12, 12 July 2023 (EDT))
• 11:32, 12 July 2023 Hla28 talk contribs uploaded a new version of File:MiRNA Annotation Decision Tree 2023.png
• 09:12, 12 July 2023 Ga362 talk contribs uploaded a new version of File:MiRNA Annotation Decision Tree 2023.png
• 09:07, 12 July 2023 Ga362 talk contribs reverted File:MiRNA Annotation Decision Tree 2023.png to an old version (Reverted to version as of 06:06, 12 July 2023 (EDT))
• 06:11, 12 July 2023 Ruth.lovering talk contribs uploaded a new version of File:MiRNA Annotation Decision Tree 2023.png
• 06:06, 12 July 2023 Ruth.lovering talk contribs created page File:MiRNA Annotation Decision Tree 2023.png
• 06:06, 12 July 2023 Ruth.lovering talk contribs uploaded File:MiRNA Annotation Decision Tree 2023.png