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  • 08:58, 30 June 2022External ontologies (hist | edit) ‎[1,170 bytes]Pascale (talk | contribs) (Created page with "GO uses external ontologies for the logical definitions of some terms. =ChEBI= Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. ChEBI is used to describe compounds in GO, as well as in RHEA. Compounds used in GO are the forms present at pH 7, the physiological pH under most conditions in most organisms annotated with GO. The pH is not 7.3 in all organelles, organs and orga...")
  • 11:49, 29 June 2022Projects update meeting 2022-07-06 (hist | edit) ‎[2,036 bytes]Pascale (talk | contribs) (Created page with "= Attendees = * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: * Regrets: ==GOC meeting== == Ongoing work updates == ===Google drive move=== https://github.com/orgs/geneontology/projects/90 * Suzy to report on status ===[https://github.com/orgs/geneontology/projects/80 Model copy]=== * Status === Adding SO terms as valid range for 'occurs in' annotation extension === * Curators would like to be able to specify chromosomal...")
  • 08:43, 29 June 2022Deprecated relations (hist | edit) ‎[730 bytes]Pascale (talk | contribs) (Created page with "==Deprecated Relations== These relations are not supported in the ontology, in GO-CAM or in Protein2GO anymore: *occurs_at - use occurs_in instead * dependent_on *has_agent - not in RO: in AE graph the parent for this term is 'has_participant' * has_direct_input * in_absence_of * in_presence_of * independent_of * localization_dependent_o...")
  • 08:06, 29 June 2022Annotation Conf. Call 2022-07-05 (hist | edit) ‎[1,714 bytes]Vanaukenk (talk | contribs) (Created page with "= Agenda and Minutes = == Meetings and Announcements == === Fall 2022 Consortium Meeting === * Likely at Caltech, October 11th - 13th * Please still fill out the meeting survey from Pascale === Noctua === *Regularly scheduled Noctua outage: **Thursday, June 23rd == GO Release Pipeline == * June release == AmiGO == == Ontology == === Membrane CC Terms === *Proposal to obsolete and reorganize CC ontology for membrane annotations ** Capturing membrane protein topolog...")
  • 09:46, 28 June 2022Projects update meeting 2022-06-29 (hist | edit) ‎[2,506 bytes]Vanaukenk (talk | contribs) (Created page with "= Attendees = * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: == Ongoing work updates == ===Release/snapshop update=== New release started ==SOP for project management== https://docs.google.com/document/d/1yWU8xy-lK34p6bSp2EDlTvonbbEr6mCzN2mdLhjNXv0/edit# === Adding SO terms as valid range for 'occurs in' annotation extension === * Curators would like to be able to specify chromosomal regions where MFs occur * Right now, SO...")
  • 10:57, 22 June 2022Projects update meeting 2022-07-20 (hist | edit) ‎[216 bytes]Cjm (talk | contribs) (Created page with " Paper planning: Chris and Nomi")
  • 07:42, 20 June 2022Ontology meeting 2022-06-27 (hist | edit) ‎[3,510 bytes]Pascale (talk | contribs) (Created page with "* '''Group members:''' Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul * '''Present:''' * '''Regrets: ''' =Editors discussion tickets= ==Protein processing & specificity (Raymond, Helen)== https://github.com/geneontology/go-ontology/issues/23378 see also notes from last call: Ontology_meeting_2022-06-6 ==Glycosylation ontology== Email from Alex Diehl Hi Chris, Darren, and Pascale, Over the past year or so I worked with T...")