AmiGO 2 Manual: Deprecated Features

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Introduction

As AmiGO 2 moves forwards and offers new features, there a few features that are deprecated and will eventually no longer be offered.

Replacements for some of these tools can be found at GO Tools Registry. The beta GO Galaxy environment is also available for some work.

GO Blast

This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/blast.cgi

Term Enrichment

We have switched over to a more abstracted system, currently using PANTHER as the engine. This functionality is available in AmiGO and will soon be available from the GO homepage.

This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/term_enrichment

Slimmer/Mapper

This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/slimmer

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