Annotation usage examples for each annotation extension relation

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 UNDER REVIEW

GO relationships OBO file

Back to Annotation Extension

Information on Folding and Unfolding

Annotation extension QuickGO graph [1]


In the list below the term available in the Annotation extension QuickGO graph ('AE graph') are compared to the term listed in RO 'Align' means these have the same parents if the AE graph parent is listed then this means there is a difference between the RO term and the AE graph


Relations

acts on population of

causally upstream of - align, although in AE graph the parent for this term is 'root node'

exists during - not in RO: in AE graph the parent for this term is 'root node'

happens during - align both have 'root node' as parent

has participant - not for direct annotation; used in the ontology

  • results in formation_of - in both RO and AE graph, the parent for this term is 'has_output', although RO has additional parent terms too
  • results_in_acquisition_of_features_of - in both but in AE graph the parent for this term is 'has_participant'; in RO there are other parent terms, although does have 'has participant' as a grandparent
  • results_in_development_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent for this term is 'has_participant'
  • results_in_movement_of - in both RO and AE graph, however in RO there one additional parent, although does have 'has participant' as a grandparent, in AE graph the parent for this term is 'has_participant'
  • results_in_morphogenesis_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is 'has_participant'
  • results_in_maturation_of - in both but in AE graph the parent for this term is 'has_participant'; in RO there are other parent terms, although does have 'has participant' as a grandparent

regulates_o_has_participant - not in RO: in AE graph the parent for this term is 'root node'

occurs_in - Align both have 'root node' as parent

part_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'

activated_by - not in RO: in AE graph the parent for this term is 'root node'

inhibited_by - not in RO: in AE graph the parent for this term is 'root node'

process has causal agent

results_in_commitment_to - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'

results_in_determination_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'

results_in_specification_of - in both RO and AE graph, however in RO there are additional parents, in AE graph the parent is the 'root node'


has_part

during

Relations in Protein2GO graph not in the lists above

produced_by

adjacent_to

coincident_with

has_end_location

has_start_location

has_target_end_location

has_target_start_location

regulates

  • negatively_regulates
  • positively_regulates
  • directly_regulates
    • directly_negatively_regulates
    • directly_positively_regulates

regulates_o_has_input

  • regulates_o_results_in_division_of
  • regulates_o_results_in_formation_of
  • regulates_o_results_in_maturation_of
  • regulates_o_results_in_movement_of
  • regulates_o_results_in_specification_of
  • regulates_o_results_in_acquisition_of_features_of
  • regulates_o_results_in_commitment_to
    • regulates_o_results_in_morphogenesis_of (parent has_regulation_target)
    • regulates_o_has_input (parent has_regulation_target)
      • regulates_transport_of (parent regulates_o_has_input)
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