Inferred from Rapid Divergence(IRD)
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Overview
- IRD is a type of phylogenetic evidence characterized by rapid divergence from ancestral sequence. Annotating with this evidence code implies a NOT annotation.
- The principles underlying phylogenetic-based annotation are described further in the Phylogenetic annotation overview, but briefly, this annotation pipeline relies on phylogenetic analyses to transfer annotations amongst related sequences based on common ancestry.
- Further information may be found in Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium by Gaudet et al., 2011.
Examples of IRD Usage
DB Object ID | DB Object Symbol | Qualifier | GO ID | DB:Reference | Evidence Code | With/From |
---|---|---|---|---|---|---|
TAIR:AT2G31280 | CPUORF7 | NOT | GO:0004674 | TAIR:Communication:501741973 | IRD | PANTHER:PTN000357291 |
Use of the With/From Field for IRD
When IRD Should NOT be Used
Quality Control Checks
Evidence and Conclusion Ontology
ECO:0000321 rapid divergence from ancestral sequence evidence used in manual assertion
Links
Curator Guide to GO Evidence Codes
Gene Ontology website GO Evidence Codes list
Review Status
Last reviewed: January 30, 2018