10March09 Phone Conference: Difference between revisions

Revision as of 14:58, 9 March 2009

GAF file generated from the wiki page: can everyone have a look and let us know if there are problems with the file?
Adding relationships to binding terms in the ontology for enzymes and their substrates : Pascale spoke to Jane- the ontology group will look into that.
modification-dependent protein catabolic process (GO:0019941) -Suggestion to add synonym as modification-initiated protein catabolic process ; also to add proteolysis as synonym to many terms as required
obsolete 'ATP-dependent proteolysis: Not closed yet, why?

Stems from the electronic jamborees:
- Mouse = carbamoyl-phosphate synthase (ammonia) activity (IMP) => urea cycle IC
- Can we do = carbamoyl-phosphate synthase (ammonia) activity (ISS) => urea cycle IC
- ie, does that give two meanings to IC? We can just be careful when we propagate annotations to use IC from EXP?

Setting up a working group

Tuesday April 14, 2009, 8 AM PDT, 10 AM CDT, 11 AM EST, 4 PM BST

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 ==Action Items from electronic jamboree==
 * GAF file generated from the wiki page: can everyone have a look and let us know if there are problems with the file?
+* Adding relationships to binding terms in the ontology for enzymes and their substrates : Pascale spoke to Jane- the ontology group will look into that.
+* modification-dependent protein catabolic process (GO:0019941) -Suggestion to add synonym as modification-initiated protein catabolic process ; also to add proteolysis as synonym to many terms as required
+* obsolete 'ATP-dependent proteolysis: Not closed yet, why?
+https://sourceforge.net/tracker/index.php?func=detail&aid=2635152&group_id=36855&atid=440764
 ==PAINT update==