11 MAY 2010 RefGen Phone Conference (Archived): Difference between revisions

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==Present==
==Present==
* GOA: Rachael
* GOA: Rachael, Yasmin
* BHF-UCL: Ruth, Yasmin
* BHF-UCL: Ruth
* MGI: Li, Mary
* MGI: Li, Mary
* RGD: Stan
* RGD: Stan

Revision as of 14:57, 11 May 2010

Present

  • GOA: Rachael, Yasmin
  • BHF-UCL: Ruth
  • MGI: Li, Mary
  • RGD: Stan
  • Flybase: Susan
  • dictyBase: Pascale
  • TAIR: Donghui, Tanya
  • AgBase:
  • SGD: Rama, Julie
  • pombe
  • Ecoli:
  • Wormbase: Ranjana Kishore, Kimberly Van Auken
  • ZFIN: Doug
  • PPOD:
  • Berkeley: Suzi, Seth

PAINT-generated GAF file

Samples are avilable for download here:

http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/submission/paint/

  • Issue (Doug): many IDs in the 'with' column - this creates a display problem
  • Issue: (Ranjana, Doug): hard to manage downloading all the individual families; especially once we'll have many families
  • Databases must make sure that they accept and display annotations here data_source =ref genome
  • Where will the reference be displayed from?
  • For the cvs repository: it would be helpful if there was a file that would contain ALL annotations (not just by family) with only the 12 MODs
  • GO ref genome xref description should be expanded on the webpage.
  • Need to also confirm that ref_genome is the correct string for this column.

Preparation of GO camp

  • Progress by each working group - 5-10 minute summary
  1. Regulation : Jane Lomax and Kimberly VanAuken
  2. Downstream events: Rachael Huntley and Varsha Khodiyar
  3. Protein binding: Ruth Lovering and Ursula Hinz binding discussion
  4. Protein complexes: Pascale Gaudet and Bernd Roechert
  5. Response to : Rebecca Foulger and Pascale Gaudet
  6. Annotation Propagation: Alan Bridge and Paul Thomas
  7. HTP: Rama Balakrishnan