11 MAY 2010 RefGen Phone Conference (Archived): Difference between revisions
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* Wormbase: Ranjana Kishore, Kimberly Van Auken | * Wormbase: Ranjana Kishore, Kimberly Van Auken |
Revision as of 18:02, 11 May 2010
Present
- GOA: Rachael, Yasmin
- BHF-UCL: Ruth
- MGI: Li, Mary
- RGD: Stan
- Flybase: Susan
- dictyBase: Pascale
- TAIR: Donghui, Tanya
- AgBase:
- SGD: Rama, Julie
- pombe: Val
- Ecoli:
- Wormbase: Ranjana Kishore, Kimberly Van Auken
- ZFIN: Doug
- PPOD:
- Berkeley: Suzi, Seth
PAINT-generated GAF file
Samples are avilable for download here:
http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/submission/paint/
- Issue (Doug): many IDs in the 'with' column - this creates a display problem
- Issue: (Ranjana, Doug): hard to manage downloading all the individual families; especially once we'll have many families
- Databases must make sure that they accept and display annotations here data_source =ref genome
- Where will the reference be displayed from?
- For the cvs repository: it would be helpful if there was a file that would contain ALL annotations (not just by family) with only the 12 MODs
- GO ref genome xref description should be expanded on the webpage.
- Need to also confirm that ref_genome is the correct string for this column.
Preparation of GO camp
- Progress by each working group - 5-10 minute summary
- Regulation : Jane Lomax and Kimberly VanAuken
- Downstream events: Rachael Huntley and Varsha Khodiyar
- Protein binding: Ruth Lovering and Ursula Hinz binding discussion
- Protein complexes: Pascale Gaudet and Bernd Roechert
- Response to : Rebecca Foulger and Pascale Gaudet
- Annotation Propagation: Alan Bridge and Paul Thomas
- HTP: Rama Balakrishnan