14 JUNE 2011 RefGen Phone Conference (Archived): Difference between revisions
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[[Category:Reference Genome]][[Category:Archived]] | |||
==Present== | ==Present== | ||
* Pascale dictyBase | * Pascale dictyBase | ||
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* Judy MGI | * Judy MGI | ||
* Kimberly Wormbase | * Kimberly Wormbase | ||
* Ruth | * Ruth BHF-UCL | ||
* Varsha | * Varsha BHF-UCL | ||
* Dmitry MGI | * Dmitry MGI | ||
* Bren EcoliWiki | * Bren EcoliWiki | ||
* Petra dictyBase | * Petra dictyBase | ||
* Mike P-POD | * Mike P-POD | ||
* Li MGI | |||
* Mary MGI | |||
* Donghui TAIR | |||
* Brenley EcoHub/GOnuts | |||
* Rama SGD | |||
==ACTION ITEMS== | |||
#In July we'll have a jamboree on transcription factors | |||
#Brenley will set up the GOnuts soon - in advance for the jamboree | |||
#Karen to share the 'annotation manual' for transcription factors | |||
==Progress on Transcription factors annotation: reports on progress, and on use of the new terms== | ==Progress on Transcription factors annotation: reports on progress, and on use of the new terms== | ||
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* Display of the occurs_in relationship between cellular component and biological process terms, for instance for [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0033579#term=ancchart GO:0033579 protein galactosylation in endoplasmic reticulum] | * Display of the occurs_in relationship between cellular component and biological process terms, for instance for [http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0033579#term=ancchart GO:0033579 protein galactosylation in endoplasmic reticulum] | ||
==Call for volunteers to adopt a GO annotation guidance page== | ==Call for volunteers to adopt a GO annotation guidance page== | ||
http://www.geneontology.org/newIndex.shtml | |||
<br> | |||
then click on the Documentation link and then mouse over on Annotaiton. | |||
==Feedback on GO_annotation_fields_required_for_correct_display== | ==Feedback on GO_annotation_fields_required_for_correct_display== | ||
[[GO_annotation_fields_required_for_correct_display]] | [[GO_annotation_fields_required_for_correct_display]] | ||
Tanya: I would prefer that the date is essential and the assigned by is recommended (rather than essential). I think it's more important to know how old an annotation is than to know who made it. | |||
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Latest revision as of 11:13, 16 January 2018
Present
- Pascale dictyBase
- Stan RGD
- Emily and GOA
- Chris BBOP
- Judy MGI
- Kimberly Wormbase
- Ruth BHF-UCL
- Varsha BHF-UCL
- Dmitry MGI
- Bren EcoliWiki
- Petra dictyBase
- Mike P-POD
- Li MGI
- Mary MGI
- Donghui TAIR
- Brenley EcoHub/GOnuts
- Rama SGD
ACTION ITEMS
- In July we'll have a jamboree on transcription factors
- Brenley will set up the GOnuts soon - in advance for the jamboree
- Karen to share the 'annotation manual' for transcription factors
Progress on Transcription factors annotation: reports on progress, and on use of the new terms
Varsha and Pascale
- MGI has updated most of their TF annotations (BP); due to limited resources, they have not done the MF updates.
- GOA is trying to do the updates but it's taking a lot of resources
Recent additions to QuickGO
Emily
- Beta version of a QuickGO display of the changes made to the GO ontology over time now available both for specific terms, for example for apoptosis as well as for all terms from here
- anyone have suggestions for display improvements?
This provides complementatary information to Amelia's term definition change display
- Display of the occurs_in relationship between cellular component and biological process terms, for instance for GO:0033579 protein galactosylation in endoplasmic reticulum
Call for volunteers to adopt a GO annotation guidance page
http://www.geneontology.org/newIndex.shtml
then click on the Documentation link and then mouse over on Annotaiton.
Feedback on GO_annotation_fields_required_for_correct_display
GO_annotation_fields_required_for_correct_display
Tanya: I would prefer that the date is essential and the assigned by is recommended (rather than essential). I think it's more important to know how old an annotation is than to know who made it.