2010 GO camp Meeting Agenda

From GO Wiki
Jump to navigation Jump to search

Day 1 morning session

Introductions and objectives of the meeting

Serenella Ferro Rojas and Pascale Gaudet

GO – Ontology, tools and technical aspects

  1. An introduction to the GO ontology : terms, definitions, relationships, cross-products. Future developments to the annotation format – GAF2.0 (Including presentation of column 16) The extended GO OBO format (GO editor: Jane Lomax)
  2. GO browsers: Amigo and QuickGO (Rachael Huntley)
  3. Introduction to the Reference Genome Project (Pascale Gaudet)
  4. Annotation extensions: column 16

Day 1 afternoon session: Focused annotation Session 1

Binding documentation

Annotation of complexes

Annotation of HTP data: reviewing the guidelines

Chairs: Rama Balakrishnan and TBA from Swiss-Prot

  • Rama : SGD practices
  • Swiss-Prot practices

Day 2 morning session: Focused annotation Session 2

Response to terms

How is a downstream effect defined

Chair:

Working group: 2010_GO_camp_working_groups_composition

Day 2 afternoon session

Annotation propagation rules and Paint tool


  • Review of the annotation guidelines used by GO, UniProt and other contributing resources(e.g. Ensembl compara), questions/discussions
  • PAINT software and examples

Day 3 morning session: Focused annotation Session 3:

Use of Regulation

Day 3 afternoon session: Future plans

  • Chairs: Suzi and Pascale
  1. Division of annotation and GO content development effort and feedback between participating databases (UniProtKB and MODs)
  2. Annotation process
  3. Annotation infrastructure
  4. Co-annotation/verification system


Closing discussion and summary of meeting

Pascale Gaudet





Other suggestions for agenda items

  1. What is the bottle neck for manual annotations (with experimental evidence)? How can we step up manual curation? (Rama)
  2. How are the various annotating groups keeping with all the ontology development/changes (new relationships specifically)? (Rama)
  3. How to define the limits of ISS propagation from phylogenetic studies ? (Manu)
  4. How to distinguish between large-scale experiments (LSE) and specific experiments derived GO annotation ? PubMed list of LSE, additional tags ?!? (Manu)



Back to 2010_GO_camp_Meeting_Logistics