Difference between revisions of "2010 Stanford Meeting Logistics"

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| Yes
| Yes
| alone from work/home, can present PAINT families that have been curated via webex if that is on the agenda for the SAB
| alone from work/home, can present PAINT families that have been curated via webex if that is on the agenda for the SAB
| Lakshmi Pillai
| AgBase
| pillai@cvm.msstate.edu
| Yes
| No

Revision as of 20:04, 17 March 2010


GO consortium & SAB meetings March 30-31, April 1, 2010

  1. We wish all attendees to attend from the morning of March 30 through the morning of April 1st. The afternoon of April 1st will be for all GO subcontract PIs, GOC PIs and our SAB. We suggest you arrive the evening of March 29th and leave after noon on the 1st, unless you are a PI or SAB member.


Meetings will be at the Stanford University, Stanford, CA, USA.

The GOC and SAB meeting will take place at the Arrillaga Alumni Center.

Lunches will be at the Arrillaga Center.

There will be a group dinner on March 31st for the GOC and SAB.

We will also facilitate dinners on March 29th and 30th. There are a large variety of restaurants in the area.


Stanford University maps


Registration will open in early 2010.

  1. Registration Fee. We anticipate a minimal registration fee to cover lunch and a light breakfast. The meeting will be sponsored by the Cherry Lab.

Lodging Information

Four hotels are within a 15-20 minute walk to the Alumni Center. Ordered below by price per night, lowest to highest.

  1. Hotel California $
  2. Cardinal Hotel $
  3. Stanford Terrace Inn $$
  4. Sheraton Palo Alto Hotel $$$$
  5. Westin Palo Alto $$$$


Workshop/Tutorial-Curators meet developers (content and software)

A workshop/tutorial on how to use all the utilities and content that GO has to offer.

  • AmiGO has lot of cool features now and many curators may or may not know how to incorporate these features in everyday curation.
  • how to interpret relationships in the ontology, how the annotations can mean something else if the relationships are overlooked etc.

Taxon IDs

I'd like a discussion of taxon IDs and subspecies. --JimHu 17:28, 4 February 2010 (UTC)

Making ext GO 'main'

A suggestion from the OBO Foundry meeting: we make GO ext the main GO file, the one that new users see. The other files continue to exist in the same place, but make it clear they are legacy files. That way anyone new coming to GO will build tools using GO ext. [Jane]

Guidelines for 'binding' terms

Discuss guideline documentation, progess and unresolved issues [Ruth].

proposed guidelines

Unresolved issues:

  • Should we include transporters in these guidelines?
  • Should we capture drug information?
  • Should the guidelines include a statement suggesting that the specific substrate for an enzyme with 'GO:0032451 demethylase activity' can be included in column 16?
  • Should we create terms like ‘ATP binding involved in kinase activity'?
  • What, if any, binding term annotations can be transferred via ISS/ISO?


Airport codes: SFO = San Francisco International; SJC = San Jose International Airport

Name Organization Arrival Date/Time to Airport (see codes above) Departure Date/Time from Airport
Mike Cherry GO / SGD walking
Judy Blake GO / MGI March 29 SFO April 2 SFO
Suzi Lewis GO / BBOP Driving
Chris Mungall GO / BBOP CalTrain
Seth Carbon GO / BBOP Driving
Amina Abdulla GO / BBOP Driving
Amelia Ireland GO / BBOP Hitching a ride
Kara Dolinski GO / PPOD TBA TBA
Eva Huala TAIR March 29 April 2
Karen Eilbeck SO (U of Utah) San Jose 29th March San Jose April 1 - evening
Barry Smith SAB (U at Buffalo) March 31 SFO April 1 SFO
Richard Scheuermann SAB (UT Southwestern) March 31 SJC 9:30 am April 1 SJC 6:15 pm
Tanya Berardini TAIR on site on site
Donghui li TAIR on site on site
Larry Hunter SAB (U Colorado) March 31 SFO April 2 SFO
Paul Sternberg WormBase and Caltech San Jose San Jose
Doug Howe ZFIN SFO March 29
Dianna Fisk SGD on site on site
Ben Hitz SGD on site on site
Susan Tweedie FlyBase March 27 SFO April 1 16:55 SFO
Jane Lomax GO-EBI March 29 SFO April 2 SFO
Pascale Gaudet dictyBase
Harold Drabkin MGI March 29th SFO April TBA
Terry Meehan MGI March 28th SFO April 2
Jim Hu EcoliWiki March 29 SFO 8PM April 2 SFO 1:40PM
David Hill GO/MGI
Stan Laulederkind RGD
Monte Westerfield ZFIN April 1 SFO
Selina Dwight SGD on site on site
Kate Dreher TAIR on site on site
Rama Balakrishnan SGD on site on site
Stacia Engel SGD N/A N/A
Ranjana Kishore WormBase SJC 3/29 5.50 PM SJC 4/01 3.00 PM
Kimberly Van Auken WormBase TBD TBD
Petra Fey dictyBase TBD TBD
Peter D'Eustachio Reactome / NYUMC SJC 3/29 7:02 PM SJC 4/1 10:25 PM
Serenella Ferro Rojas UniProtKB/Swiss-Prot March 29 SFO April 4 SFO
Eurie Hong SGD on site on site
Emily Dimmer GOA March 29 SFO April 2 SFO
Tony Sawford GOA March 29 SFO April 2 SFO
Karen Christie SGD on site on site
Julie Park SGD on site on site
Ingrid Keseler EcoCyc N/A N/A

Remote Attendees

Webex and Telephone Conferencing will be provided

Name Organization email (needed to set up your remote access) Attending GOC (March 30-31) Attending SAB (April 1) Calling in alone or in a group (with whom and from where, if known)
Midori Harris EBI GO midori at ebi dot ac dot uk yes yes TBD
Jennifer Deegan GO Editorial Office jdeegan at ebi.ac.uk Yes Yes Probably alone from home.
Ruth Lovering BHF-UCL annotator r.lovering at ucl.ac.uk Yes Yes From home
Rachael Huntley GOA Curator huntley at ebi.ac.uk Yes Yes From home.
Michelle Giglio IGS, UMD mgiglio at som.umaryland.edu Yes No alone from work/home
Marcus Chibucos IGS, UMD mchibucos at som dot umaryland dot edu Yes No alone from work/home
Alexander Diehl MGI adiehl@informatics.jax.org Yes Yes alone from work/home
Michael Livstone Princeton livstone@genomics.princeton.edu No Yes alone from work/home, can present PAINT families that have been curated via webex if that is on the agenda for the SAB
Lakshmi Pillai AgBase pillai@cvm.msstate.edu Yes No TBD

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