2010 Timeline: Difference between revisions
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[[Category:Timelines]] | |||
[[2011_Timeline]] | |||
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{|border="1" cell spacing="0" cellpadding="5" align="center" | {|border="1" cell spacing="0" cellpadding="5" align="center" | ||
!Project | !Project | ||
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|Meet in Hinxton to plan out strategy | |Meet in Hinxton to plan out strategy <font color ="red">(DONE) | ||
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|Manually Curate GO implicit ontology (GOCHE) | |Manually Curate GO implicit ontology (GOCHE)<font color ="red">(DONE) | ||
|Meet in CA to refine GOCHE, Align GOCHE with CHEBI (4 days) | |Meet in CA to refine GOCHE, Align GOCHE with CHEBI (4 days) | ||
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|First draft of paper <font color ="red">(DONE) | |||
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|Request new terms needed from ChEBI | |||
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|[[Cross_Product_Guide|Internal Cross Products]] | |[[Cross_Product_Guide|Internal Cross Products]] | ||
|David, Tanya, Jane, Chris | |David, Tanya, Jane, Chris | ||
|BPxBP regulates set committed (DONE) | |BPxBP regulates set committed <font color ="red">(DONE) | ||
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|CCxCC (part_of only set committed) | |CCxCC (part_of only set committed)<font color ="red">(DONE) | ||
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|BPxBP (part_of only set committed)<font color ="red">(DONE) | |||
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|[[Function-Process Links]] | |[[Function-Process Links]] | ||
|David, Tanya | |David, Tanya, Amelia | ||
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|Transporter activity- transport <font color ="red">(DONE) | |||
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|[[GO slim overhaul|Generic GO slim Overhaul]] | |[[GO slim overhaul|Generic GO slim Overhaul]] | ||
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|First revision (DONE) | |First revision <font color ="red">(DONE) | ||
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|testing | |||
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|Final release | |||
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|Write paper | |||
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|Jane, Jen,Chris | |Jane, Jen,Chris | ||
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| First version of file (DONE) | | First version of file <font color ="red">(DONE) | ||
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|Paper written <font color ="red">(DONE) | |||
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|Michelle, Jane, Candace, Ariane Toussaint, Brenley, Alex & others | |Michelle, Jane, Candace, Ariane Toussaint, Brenley, Alex & others | ||
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|Draft terms finished <font color ="red">(DONE) | |||
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|Terms integrated in to main ontology | |||
|Virus annotation guidelines written | |||
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|Paper written | |||
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|[[Signaling |Signaling overhaul]] | |[[Signaling |Signaling overhaul]] | ||
|Becky, Alex, Sandra, Peter, Ruth and others | |Jen, Becky, Alex, Sandra, Peter, Ruth and others | ||
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|New high-level structure (DONE) | |New high-level structure <font color ="red">(DONE) | ||
|Clean-up of lower level terms | |Clean-up of lower level terms | ||
|Rehousing regulation of signaling terms <font color ="red">(DONE) | |||
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| | |New Wnt signaling terms for RefGenome proj | ||
| | |Connect cell surface receptors and intracellular signaling casettes | ||
| | |Check involved in/by/via terms in signaling node | ||
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|Preliminary analysis | |Preliminary analysis <font color ="red">(DONE) | ||
|Karen attends transcription meeting in Spain | |Karen attends transcription meeting in Spain <font color ="red">(DONE) | ||
|Ontology revisions | |Ontology revisions | ||
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|[[Kidney Development]] | |[[Kidney Development]] | ||
|David, Doug, Becky, Yasmin and community experts | |David, Doug, Becky, Yasmin and community experts | ||
|Meeting with experts (DONE) | |Meeting with experts <font color ="red">(DONE) | ||
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|Generic kidney terms in GO (DONE) | |Generic kidney terms in GO <font color ="red">(DONE) | ||
|metanephros terms (DONE) | |metanephros terms <font color ="red">(DONE) | ||
|pronephros terms | |pronephros terms <font color ="red">(DONE) | ||
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|mesonephros terms <font color ="red">(DONE) | |||
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|fly renal terms <font color ="red">(DONE) | |||
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|PAMGO collaboration | |PAMGO collaboration | ||
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| | |Added 50 new terms | ||
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|[[Ontology_Quality_Control|GO reasoner-based quality control]] | |[[Ontology_Quality_Control|GO reasoner-based quality control]] | ||
|David, Tanya, Chris | |David, Tanya, Chris | ||
| | |Abduced links reports (ongoing) | ||
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|Automated QC on regulates terms (implemented) | |Automated QC on regulates terms <font color ="red">(implemented) | ||
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|Automated QC on CCxCC cross-products | |Automated QC on CCxCC cross-products <font color ="red">(implemented) | ||
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|Automated QC on BPxBP cross-products <font color ="red">(implemented) | |||
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|SF tracker items | |SF tracker items | ||
|Everyone | |Everyone, Jane coordinates | ||
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|[[Cognition and Sensory perception]] | |[[Cognition and Sensory perception]] | ||
|David | |David, community experts | ||
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|Initial meetings with experts | |Initial meetings with experts from The Jackson Laboratory <font color ="red">(DONE) | ||
| | |Meeting with MGI phenotype group to coordinate effort <font color ="red">(DONE) | ||
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|[[Neurobiology Project|Neurological processes and components]] | |||
|Jane, Chris and TBD | |||
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|[[Enzyme Alignment]]: improve enzyme functions, align with external databases, MF-BP links for enzymes/metabolic processes | |||
|Amelia, Chris, David, Jane, Tanya | |||
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| First parse/pass of GO reactions; remove obvious errors | |||
| Identify GO terms for cleaning up | |||
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| Aim to have most dodgy terms clean | |||
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Revision as of 18:16, 7 April 2014
Project | Personel | January | February | March | April | May | June | July | August | September | October | November | December |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Chemical terms in GO | Harold, David, Tanya, Jane, Chris | Meet in Hinxton to plan out strategy (DONE) | Manually Curate GO implicit ontology (GOCHE)(DONE) | Meet in CA to refine GOCHE, Align GOCHE with CHEBI (4 days) | First draft of paper (DONE) | Request new terms needed from ChEBI | |||||||
Internal Cross Products | David, Tanya, Jane, Chris | BPxBP regulates set committed (DONE) | CCxCC (part_of only set committed)(DONE) | BPxBP (part_of only set committed)(DONE) | |||||||||
Function-Process Links | David, Tanya, Amelia | Transporter activity- transport (DONE) | |||||||||||
Generic GO slim Overhaul | Jane, Val | First revision (DONE) | testing | Final release | Write paper | ||||||||
Taxon Checks | Jane, Jen,Chris | First version of file (DONE) | Paper written (DONE) | ||||||||||
Virus-related term overhaul | Michelle, Jane, Candace, Ariane Toussaint, Brenley, Alex & others | Draft terms finished (DONE) | Terms integrated in to main ontology | Virus annotation guidelines written | Paper written | ||||||||
Signaling overhaul | Jen, Becky, Alex, Sandra, Peter, Ruth and others | New high-level structure (DONE) | Clean-up of lower level terms | Rehousing regulation of signaling terms (DONE) | New Wnt signaling terms for RefGenome proj | Connect cell surface receptors and intracellular signaling casettes | Check involved in/by/via terms in signaling node | ||||||
Transcription & transcription factor activity overhaul | David, Karen | Preliminary analysis (DONE) | Karen attends transcription meeting in Spain (DONE) | Ontology revisions | |||||||||
Kidney Development | David, Doug, Becky, Yasmin and community experts | Meeting with experts (DONE) | Generic kidney terms in GO (DONE) | metanephros terms (DONE) | pronephros terms (DONE) | mesonephros terms (DONE) | fly renal terms (DONE) | ||||||
PAMGO collaboration | Jane, PAMGO | ongoing | Added 50 new terms | ||||||||||
GO reasoner-based quality control | David, Tanya, Chris | Abduced links reports (ongoing) | Automated QC on regulates terms (implemented) | Automated QC on CCxCC cross-products (implemented) | Automated QC on BPxBP cross-products (implemented) | ||||||||
SF tracker items | Everyone, Jane coordinates | ||||||||||||
Cognition and Sensory perception | David, community experts | Initial meetings with experts from The Jackson Laboratory (DONE) | Meeting with MGI phenotype group to coordinate effort (DONE) | ||||||||||
Protein complexes in GO | Harold | ||||||||||||
Neurological processes and components | Jane, Chris and TBD | ||||||||||||
Enzyme Alignment: improve enzyme functions, align with external databases, MF-BP links for enzymes/metabolic processes | Amelia, Chris, David, Jane, Tanya | First parse/pass of GO reactions; remove obvious errors | Identify GO terms for cleaning up | Aim to have most dodgy terms clean |