2010 Timeline

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Project Personel January February March April May June July August September October November December
Chemical terms in GO Harold, David, Tanya, Jane, Chris Meet in Hinxton to plan out strategy (DONE) Manually Curate GO implicit ontology (GOCHE)(DONE) Meet in CA to refine GOCHE, Align GOCHE with CHEBI (4 days) First draft of paper (DONE) Request new terms needed from ChEBI
Internal Cross Products David, Tanya, Jane, Chris BPxBP regulates set committed (DONE) CCxCC (part_of only set committed)(DONE) BPxBP (part_of only set committed)(DONE)
Function-Process Links David, Tanya, Amelia Transporter activity- transport (DONE)
Generic GO slim Overhaul Jane, Val First revision (DONE) testing Final release Write paper
Taxon Checks Jane, Jen,Chris First version of file (DONE) Paper written (DONE)
Virus-related term overhaul Michelle, Jane, Candace, Ariane Toussaint, Brenley, Alex & others Draft terms finished (DONE) Terms integrated in to main ontology Virus annotation guidelines written Paper written
Signaling overhaul Jen, Becky, Alex, Sandra, Peter, Ruth and others New high-level structure (DONE) Clean-up of lower level terms Rehousing regulation of signaling terms (DONE) New Wnt signaling terms for RefGenome proj Connect cell surface receptors and intracellular signaling casettes Check involved in/by/via terms in signaling node
Transcription & transcription factor activity overhaul David, Karen Preliminary analysis (DONE) Karen attends transcription meeting in Spain (DONE) Ontology revisions
Kidney Development David, Doug, Becky, Yasmin and community experts Meeting with experts (DONE) Generic kidney terms in GO (DONE) metanephros terms (DONE) pronephros terms (DONE) mesonephros terms (DONE) fly renal terms (DONE)
PAMGO collaboration Jane, PAMGO ongoing Added 50 new terms
GO reasoner-based quality control David, Tanya, Chris Abduced links reports (ongoing) Automated QC on regulates terms (implemented) Automated QC on CCxCC cross-products (implemented) Automated QC on BPxBP cross-products (implemented)
SF tracker items Everyone, Jane coordinates
Cognition and Sensory perception David, community experts Initial meetings with experts from The Jackson Laboratory (DONE) Meeting with MGI phenotype group to coordinate effort (DONE)
Protein complexes in GO Harold
Neurological processes and components Jane, Chris and TBD
Enzyme Alignment: improve enzyme functions, align with external databases, MF-BP links for enzymes/metabolic processes Amelia, Chris, David, Jane, Tanya First parse/pass of GO reactions; remove obvious errors Identify GO terms for cleaning up Aim to have most dodgy terms clean