2014 Barcelona GOC Meeting Agenda: Difference between revisions
Jump to navigation
Jump to search
Line 10: | Line 10: | ||
# Discussion of catabolism and biosynthesis (Pascale) | # Discussion of catabolism and biosynthesis (Pascale) | ||
# Discussion on 'protein dimerization activity' vs. e.g. 'protein homotetramerization' (MF vs BP). See summary here: http://sourceforge.net/p/geneontology/ontology-requests/11087/ (Paola) | # Discussion on 'protein dimerization activity' vs. e.g. 'protein homotetramerization' (MF vs BP). See summary here: http://sourceforge.net/p/geneontology/ontology-requests/11087/ (Paola) | ||
# Refresher/overview of available TG templates (Jane | # Refresher/overview of available TG templates (Jane) | ||
# Use of expanded evidence codes and interactions with ECO (Kimberley) | # Use of expanded evidence codes and interactions with ECO (Kimberley) | ||
Not directly GO related | Not directly GO related | ||
# Monique Zahn: Quality control process in neXtProt (about 15 minutes) | # Monique Zahn: Quality control process in neXtProt (about 15 minutes) | ||
===Common Curation Environment=== | ===Common Curation Environment=== | ||
# CAT, Protein2GO (Kimberly, Chris, Michael M., Tony) | # CAT, Protein2GO (Kimberly, Chris, Michael M., Tony) |
Revision as of 11:17, 1 October 2014
COMING SOON .....
Day1-Curation and Annotations
Curation paradigms and documentations
- With/From field cardinality proposal(Rachael)
- Annotation extension relationships: how to use them (Ruth)
- Discussion of catabolism and biosynthesis (Pascale)
- Discussion on 'protein dimerization activity' vs. e.g. 'protein homotetramerization' (MF vs BP). See summary here: http://sourceforge.net/p/geneontology/ontology-requests/11087/ (Paola)
- Refresher/overview of available TG templates (Jane)
- Use of expanded evidence codes and interactions with ECO (Kimberley)
Not directly GO related
- Monique Zahn: Quality control process in neXtProt (about 15 minutes)
Common Curation Environment
- CAT, Protein2GO (Kimberly, Chris, Michael M., Tony)
- Noctua development (Suzi)
- LEGO models of annotation extensions (David OS)
PAINT
- PAINT Jamboree debrief, future directions (Huaiyu, Pascale)
- Autophagy in PAINT: lessons learned (Marc F, Pascale)
Day2-Ontology Development and Priorities
- Clarity vs Expressiveness in GO - striking a balance (David OS working on a white paper on this).
- Progress in moving GO editing and annotation extension relations to OWL. (David OS)
- Pilot project to replace NCI thesaurus 'biological process' branch with GO biological process (Chris)
- GO and human disease (Chris)
- High-level protein family classification (Jane)
- Proposed changes to Molecular Function (Jane)
Day3-UserSupport including AmiGO and Enrichment Analysis
- AmiGO feedback and development (Moni)
- GO Help Desk
- Adding people to the rota
- Assigning the help desk
- adding to FAQ
- GO Enrichment Analysis (Judy, Paul, others)
- report on needs/ improvements in AmiGO tool (Seth, Paul, Rama)
- intersection with Panther db often down
- Judy working on white paper 'Gene Enrichment Anaysis using the GO: the good, the bad, the ugly.' I will have early draft at meeting.
- report on needs/ improvements in AmiGO tool (Seth, Paul, Rama)