Difference between revisions of "2014 Barcelona GOC Meeting Agenda"

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# Discussion of catabolism and biosynthesis (Pascale)
# Discussion of catabolism and biosynthesis (Pascale)
# Discussion on 'protein dimerization activity' vs. e.g. 'protein homotetramerization' (MF vs BP). See summary here: http://sourceforge.net/p/geneontology/ontology-requests/11087/ (Paola)
# Discussion on 'protein dimerization activity' vs. e.g. 'protein homotetramerization' (MF vs BP). See summary here: http://sourceforge.net/p/geneontology/ontology-requests/11087/ (Paola)
# Refresher/overview of available TG templates (Jane?)
# Refresher/overview of available TG templates (Jane)
# Use of expanded evidence codes and interactions with ECO (Kimberley)
# Use of expanded evidence codes and interactions with ECO (Kimberley)
Not directly GO related
Not directly GO related
# Monique Zahn: Quality control process in neXtProt (about 15 minutes)
# Monique Zahn: Quality control process in neXtProt (about 15 minutes)
===Common Curation Environment===
===Common Curation Environment===
# CAT, Protein2GO (Kimberly, Chris, Michael M., Tony)
# CAT, Protein2GO (Kimberly, Chris, Michael M., Tony)

Revision as of 11:17, 1 October 2014


COMING SOON .....

Day1-Curation and Annotations

Curation paradigms and documentations

  1. With/From field cardinality proposal(Rachael)
  2. Annotation extension relationships: how to use them (Ruth)
  3. Discussion of catabolism and biosynthesis (Pascale)
  4. Discussion on 'protein dimerization activity' vs. e.g. 'protein homotetramerization' (MF vs BP). See summary here: http://sourceforge.net/p/geneontology/ontology-requests/11087/ (Paola)
  5. Refresher/overview of available TG templates (Jane)
  6. Use of expanded evidence codes and interactions with ECO (Kimberley)

Not directly GO related

  1.  Monique Zahn: Quality control process in neXtProt (about 15 minutes)

Common Curation Environment

  1. CAT, Protein2GO (Kimberly, Chris, Michael M., Tony)
  2. Noctua development (Suzi)
  3. LEGO models of annotation extensions (David OS)

PAINT

  1. PAINT Jamboree debrief, future directions (Huaiyu, Pascale)
  2.  Autophagy in PAINT: lessons learned (Marc F, Pascale)


Day2-Ontology Development and Priorities

  1. Clarity vs Expressiveness in GO - striking a balance (David OS working on a white paper on this).
  2. Progress in moving GO editing and annotation extension relations to OWL. (David OS)
  3. Pilot project to replace NCI thesaurus 'biological process' branch with GO biological process (Chris)
  4. GO and human disease (Chris)
  5. High-level protein family classification (Jane)
  6. Proposed changes to Molecular Function (Jane)

Day3-UserSupport including AmiGO and Enrichment Analysis

  1. AmiGO feedback and development (Moni)
  2. GO Help Desk
    1. Adding people to the rota
    2. Assigning the help desk
    3. adding to FAQ
  3. GO Enrichment Analysis (Judy, Paul, others)
    1. report on needs/ improvements in AmiGO tool (Seth, Paul, Rama)
      1. intersection with Panther db often down
    2. Judy working on white paper 'Gene Enrichment Anaysis using the GO: the good, the bad, the ugly.' I will have early draft at meeting.