2014 Barcelona GOC Meeting Agenda

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COMING SOON .....

Day1-Curation and Annotations

Curation paradigms and documentations

  1. With/From field cardinality proposal(Rachael)
  2. Annotation extension relationships: how to use them (Ruth)
  3. Discussion of catabolism and biosynthesis (Pascale)
  4. Discussion on 'protein dimerization activity' vs. e.g. 'protein homotetramerization' (MF vs BP). See summary here: http://sourceforge.net/p/geneontology/ontology-requests/11087/ (Paola)

and https://sourceforge.net/p/geneontology/ontology-requests/10909/

  1. Refresher/overview of available TG templates (Jane)
  2. Use of expanded evidence codes and interactions with ECO (Kimberley, with input from others - 15-20 minutes)
    1. Are any groups currently using expanded ECO codes for GO annotation?
    2. Can existing tools (Protein2GO, GO web site, AmiGO) accommodate the codes?
    3. Any reasons not to start using expanded ECO codes? Is turn around time for new ECO term requests sufficent?

Not directly GO related

  1.  Monique Zahn: Quality control process in neXtProt (about 15 minutes)

Common Curation Environment

  1. CAT, Protein2GO (Kimberly, Chris, Michael M., Tony, Rachael)
    1. annotations to IntACT IDs
  2. Noctua development (Suzi)
  3. LEGO models of annotation extensions (David OS)

PAINT

  1. PAINT Jamboree debrief, future directions (Huaiyu, Pascale)
  2.  Autophagy in PAINT: lessons learned (Marc F, Pascale)


Day2-Ontology Development and Priorities

  1. Clarity vs Expressiveness in GO - striking a balance (David OS working on a white paper on this).
  2. Progress in moving GO editing and annotation extension relations to OWL. (David OS)
  3. Pilot project to replace NCI thesaurus 'biological process' branch with GO biological process (Chris)
  4. GO and human disease (Chris)
  5. High-level protein family classification (Jane)
  6. Proposed changes to Molecular Function (Jane)

Day3-UserSupport including AmiGO and Enrichment Analysis

  1. GO site/docs development (Moni, Seth)
  2. AmiGO feedback and development (Seth)
  3. GO Help Desk
    1. Adding people to the rota
    2. Assigning the help desk
    3. adding to FAQ
  4. GO Enrichment Analysis (Judy, Paul, others)
    1. report on needs/ improvements in AmiGO tool (Seth, Paul, Rama)
      1. intersection with Panther db often down
    2. Judy working on white paper 'Gene Enrichment Anaysis using the GO: the good, the bad, the ugly.' I will have early draft at meeting.