2015 Washington DC GOC Symposium Agenda: Difference between revisions

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* 1:10 - 2:40  '''Workshop #2''':  Enrichment Analysis using the GO.
* 1:10 - 2:40  '''Workshop #2''':  Enrichment Analysis using the GO.
::-  Statistical options and parameters ( Judy, )
 
::-  Statistical options and parameters ( Judy )
::1.  Underlying strategy and parameters
::2.  Use VLAD and GeneWeaver tools to demonstrate broad enrichment analysis options and capabilities
 
::-  Defining data sets for GO enrichment analysis (Paul)
::-  Defining data sets for GO enrichment analysis (Paul)
::1.  Development of Panther and GO data sets for enrichment analysis
::2.  Current implementation through AmiGO
::3.  Most common go-help issues and solutions
::4.  Next steps and future plans
::-  GO tools, website, training, outreach, Helpdesk, and TermGenie (Heiko, Moni, Seth)
::-  GO tools, website, training, outreach, Helpdesk, and TermGenie (Heiko, Moni, Seth)



Revision as of 03:28, 14 August 2015

Morning Session

  • 9:00 - 9:30 Welcoming remarks & overview of today's agenda.
  • 9:30 - 11:00 Workshop #1: Annotation (Rama, Pascale, David, Chris, Rachael, Ruth)
- Annotating new genomes (?) and new biology - (microRNA, Rachael)
- Focus annotation (Cardiovascular and Telomeres - Ruth, mitophagy?, synapse - ?)
- Noctua - Chris (better if before AE discussion?)
- Annotating contextual information - Rachael on AE


  • 11:00 - 11:20 Coffee break

With the recent proliferation of genomic data sets, opportunities for computational scientists to make fundamental contributions to medical research have grown phenomenally. Dr Slonim's group is focused on developing novel computational methods to advance medical research in two primary areas: determining key regulatory processes governing normal human fetal development, and predicting or interpreting interactions between sets of proteins in a context-dependent fashion.

Lunch Break

  • 11:50 am - 12:40 pm


Afternoon Session

Dr. Ideker is Professor of Medicine at UCSD. He is the Director of the San Diego Center for Systems Biology and the Director of the National Resource for Network Biology. He is a pioneer in using genome-scale measurements to construct network models of cellular processes and disease.

  • 1:10 - 2:40 Workshop #2: Enrichment Analysis using the GO.
- Statistical options and parameters ( Judy )
1. Underlying strategy and parameters
2. Use VLAD and GeneWeaver tools to demonstrate broad enrichment analysis options and capabilities
- Defining data sets for GO enrichment analysis (Paul)
1. Development of Panther and GO data sets for enrichment analysis
2. Current implementation through AmiGO
3. Most common go-help issues and solutions
4. Next steps and future plans
- GO tools, website, training, outreach, Helpdesk, and TermGenie (Heiko, Moni, Seth)
  • 2:40 - 3:00 Coffee Break
  • 3:00 - 3:40 Open discussion: Q&A and concluding remarks.