2016 Hinxton LEGO/Noctua Training Agenda: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
 
(11 intermediate revisions by 3 users not shown)
Line 2: Line 2:


Everyone who has not registered for Noctua access previously, should register here: http://bit.ly/new-noctua-user
Everyone who has not registered for Noctua access previously, should register here: http://bit.ly/new-noctua-user
Sign up on the [http://wiki.geneontology.org/index.php/2016_Hinxton_LEGO/Noctua_Training_Logistics meeting logistics page]


=Agenda=
=Agenda=
[https://docs.google.com/document/d/1UqVG2qSEx__szkbvmGYkdp7A_l8o9jSAFQdkigUyFic/edit?usp=sharing  Google doc for adding questions]
*Please add any questions you have to the Google doc so we can review and provide answers/input where needed.  This will also help us with the training documentation.


==Day 1 (Wednesday, 2016-08-31)==
==Day 1 (Wednesday, 2016-08-31)==
Line 9: Line 15:
=== Morning===
=== Morning===
*9:00 - Introductions
*9:00 - Introductions
*9:15 - The Noctua Landing Page (Van Auken)
*9:15 - Motivation for LEGO Modeling (Mungall/Thomas)
*9:30 – Making Conventional Annotations using Noctua (Hill)
*9:45 - The Noctua Landing Page (Van Auken)
*10:00 - Introduction to the Annoton, Converting Conventional Annotations to Annotons (Hill)
*10:00 – Making Conventional Annotations using Noctua (Hill) - http://noctua.berkeleybop.org/editor/graph/gomodel:57c4867e00000029
*10:30 – Coffee break
*10:30 – Coffee break
*11:00 - Adding Contextual Information to Annotons (Hill)
*11:00 - Introduction to the Annoton, Converting Conventional Annotations to Annotons (Hill)
*11:30 - Introduction to Relations Used in LEGO Annotation (Thomas)
*11:30 - Adding Contextual Information to Annotons (Hill)
*12:00 - Introduction to Relations Used in LEGO Annotation (Thomas)
*12:30 - Lunch
*12:30 - Lunch
=== Afternoon===
=== Afternoon===
*13:30 - Handling Regulation (Hill)
*13:30 - Handling Regulation (Hill)
*14:00 - Linking Annotons and Individuals Together (Van Auken)
*14:00 - Linking Annotons and Individuals Together, Combining Data from Multiple Papers, Using the Function Companion (Van Auken)
*14:30- Practice Annotating Papers
*14:30- Practice Annotating Papers
*15:00 – Coffee break
*15:00 – Coffee break
*15:30 – Practice Annotating Papers
*15:30 – Practice Annotating Papers
*17:00- End Day 1
*17:00- End Day 1
Note: there will be a breakout group for 2:30pm onwards: Chris, David OS, Seth, ...


==Day 2 (Thursday, 2016-09-01)==
==Day 2 (Thursday, 2016-09-01)==


=== Morning===
=== Morning===
*9:00 – Increasing Model Content Using Data from Several Papers (Van Auken)
*9:00 – Noctua Inputs and Outputs (GPI, NEO, GPAD, GAF, and OWL; RNAs, macromolecular omplexes, ...) (Mungall)
*9:45 – Noctua Inputs and Outputs (GPI, NEO, GPAD, GAF, and OWL) (Mungall)
*10:00- Loading Noctua Annotations into MODS- the MGI example (Hill)
*10:30 – Coffee break
*10:30 – Coffee break
*11:00- Loading Noctua Annotations into MODS- the MGI example (Hill)
*11:00 – Practice Modeling
*11:30 – Practice Modeling
*12:30 - Lunch
*12:30 - Lunch



Latest revision as of 09:53, 31 August 2016

Preparation

Everyone who has not registered for Noctua access previously, should register here: http://bit.ly/new-noctua-user

Sign up on the meeting logistics page

Agenda

Google doc for adding questions

  • Please add any questions you have to the Google doc so we can review and provide answers/input where needed. This will also help us with the training documentation.

Day 1 (Wednesday, 2016-08-31)

Morning

  • 9:00 - Introductions
  • 9:15 - Motivation for LEGO Modeling (Mungall/Thomas)
  • 9:45 - The Noctua Landing Page (Van Auken)
  • 10:00 – Making Conventional Annotations using Noctua (Hill) - http://noctua.berkeleybop.org/editor/graph/gomodel:57c4867e00000029
  • 10:30 – Coffee break
  • 11:00 - Introduction to the Annoton, Converting Conventional Annotations to Annotons (Hill)
  • 11:30 - Adding Contextual Information to Annotons (Hill)
  • 12:00 - Introduction to Relations Used in LEGO Annotation (Thomas)
  • 12:30 - Lunch

Afternoon

  • 13:30 - Handling Regulation (Hill)
  • 14:00 - Linking Annotons and Individuals Together, Combining Data from Multiple Papers, Using the Function Companion (Van Auken)
  • 14:30- Practice Annotating Papers
  • 15:00 – Coffee break
  • 15:30 – Practice Annotating Papers
  • 17:00- End Day 1

Note: there will be a breakout group for 2:30pm onwards: Chris, David OS, Seth, ...

Day 2 (Thursday, 2016-09-01)

Morning

  • 9:00 – Noctua Inputs and Outputs (GPI, NEO, GPAD, GAF, and OWL; RNAs, macromolecular omplexes, ...) (Mungall)
  • 10:00- Loading Noctua Annotations into MODS- the MGI example (Hill)
  • 10:30 – Coffee break
  • 11:00 – Practice Modeling
  • 12:30 - Lunch

Afternoon

  • 13:30- Models Discussion
  • 15:00 – Coffee break
  • 15:30- Models Discussion
  • 17:00- End Day 2

Day 3 (Friday, 2016-09-02)

Morning

  • 9:00am - 12:30pm Additional Modeling Practice and Discussion, as needed.