2016 Los Angeles GOC Meeting Agenda

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Agenda

Conference Calls

  • Proposal to consolidate LEGO, Annotation, PAINT, and Ontology Development calls into one GO call held weekly on Tuesdays at 8am PST
  • These areas of annotation, and ontology development, are, or have been, converging for some time now and we think it would be a better use of everyone's time to have one weekly call where we discuss any annotation- or ontology-related issues

Annotation Issues - Conventional Annotations

  • Modified protein binding: GO terms & annotations are very inconsistent.
    • Recent github issues:
glycoprotein binding: https://github.com/geneontology/go-ontology/issues/12580#issuecomment-240782020
ubiquitinated protein binding https://github.com/geneontology/go-ontology/issues/12582#issuecomment-240452320

Annotation Issues - LEGO Annotations (Sunday AM?)

  • How are we going to handle ECO codes in Noctua. Currently there are only a limited number of codes that fall under 'used in manual assertion'. If we use codes that are not specific to the manual assertion part of the ontology, then they map to EXP. Are we going to request the entire set of codes that we think we might want to use or are we going to have an automated way to map to the correct code?
  • Are we going to allow Noctua to make annotations to the root nodes of the ontology? This would be useful for contextual annotations that are to otherwise root nodes. However some groups block these kinds of annotations because in the past, these annotations were used to keep track of genes about which we had no information.
  • MGI's experience roundtripping with Noctua Models (DPH)

Production

New data flow (Chris)