2017 Berkeley GO Editors Workshop II: Difference between revisions
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== Topics == | == Topics == | ||
* | === Fundamentals === | ||
* Understanding OWL reasoning. A practical sessions with problem solving exercises, covering: | |||
* | * Equivalent Class, SubClass; Relations: Characteristics, hierarchy, chains, domain and range; GCIs; advanced querying; explanations. | ||
* Understanding the current GO relation set. (A practical session with problem solving exercises + aim to develop better doc) | |||
* The art of designing robust equivalence axioms & design patterns ( editors would like more guidelines on how to construct these.) | |||
=== Infrastructure === | |||
* Design pattern infrastructure | |||
* Pipelines and how they run. Starting jobs with ROBOT. | * Pipelines and how they run. Starting jobs with ROBOT. | ||
* Build failures | * Build failures | ||
* Document the various fail messages and how to correct the issues. | * Document the various fail messages and how to correct the issues. | ||
=== Content === | |||
* Problematic GitHub tickets/mini Projects | * Problematic GitHub tickets/mini Projects | ||
= Logistics = | = Logistics = | ||
Revision as of 07:40, 9 June 2017
Agenda
Topics
Fundamentals
* Understanding OWL reasoning. A practical sessions with problem solving exercises, covering: * Equivalent Class, SubClass; Relations: Characteristics, hierarchy, chains, domain and range; GCIs; advanced querying; explanations. * Understanding the current GO relation set. (A practical session with problem solving exercises + aim to develop better doc) * The art of designing robust equivalence axioms & design patterns ( editors would like more guidelines on how to construct these.)
Infrastructure
* Design pattern infrastructure * Pipelines and how they run. Starting jobs with ROBOT. * Build failures * Document the various fail messages and how to correct the issues.
Content
* Problematic GitHub tickets/mini Projects
Logistics
Accommodations
Getting there:
Taxis also available from either MacArthur or Ashby
Meeting Location
Berkeley Lab, Aquatic Park Offices
Lawrence Berkeley National Laboratory (LBNL), Aquatic Park office of Biosciences Operations at Berkeley Physical address: 717 Potter Street, Berkeley, CA 94710
Travel between hotel and meeting
- Walk, 1.3 miles
- Free Hollis Shuttle
- Taxi/Lyft/Uber
Aim to be at the lab for 9am
Participants
| Name | Organization | Comments | |
|---|---|---|---|
| David Hill | Jackson Laboratory | ||
| Kimberly Van Auken | Caltech | ||
| Pascale Gaudet | SIB Swiss Institute of Bioinformatics | ||
| David Osumi-Sutherland | EBI | ||
| Karen Christie | Jackson Laboratory |