Difference between revisions of "2018 Montreal GOC Meeting Agenda"

From GO Wiki
Jump to navigation Jump to search
Line 72: Line 72:


=====Annotation=====
=====Annotation=====
* Which organisms other than cerevisiae and pombe have looked at  all protein coding genes for the availability/possibility  of GO annotation? If anyone is interested, there is a very quick/easy way to establish the difference  between: (1) "not in the GO database (not found); (2)  "unknown" (ND),  and (3) "unannotated" (no ND, and no annotation in Aspect of interest) for your organisms proteins using the complete  known protein ID set for your organism and the GO term mapper tool https://go.princeton.edu/cgi-bin/GOTermMapper (GOTermMapper provides these numbers  as part of  the output so that the slim set results can be interpreted correctly).
* Which organisms other than cerevisiae and pombe have looked at  all protein coding genes for the availability/possibility  of GO annotation?  
  Establish the difference  between:  
  * (1) "not in the GO database (not found);  
  * (2)  "unknown" (ND),   
  * (3) "unannotated" (no ND, and no annotation in Aspect of interest)  
(difference can be established  using the complete  known protein ID set for your organism and GO term mapper https://go.princeton.edu/cgi-bin/GOTermMapper)  




[[Category: GO Consortium Meetings]]
[[Category: GO Consortium Meetings]]

Revision as of 00:15, 10 August 2018

AGENDA

Milestones to be met for the Montreal meeting

GO rules update, pipeline and error reports

Eric & Pascale

Pipeline documentation

Kimberly, Pascale, Chris, Seth, etc Must be completed (as much as possible) and announced http://wiki.geneontology.org/index.php/Release_Pipeline


Ontology and Annotation documentation update

David, Kimberly and Pascale (random thoughts:

  • Ontology: mention the creation of 'projects' in GH where we moved old projects, so that its' easier t find old discussions

GO website migration

Laurent-Philippe, SuziA, etc

Noctua 1.1

Kimberly Seth, etc

PAINT

PAINT GAF file generation QC

Huaiyu and Pascale

PAINT tickets

Marc & Pascale https://github.com/geneontology/go-annotation/labels/PAINT%20annotation

Annotation

Suggestions:

  • Signaling 2017 update
  • Transcription reviews
  • ECM reviews


Ontology

Suggestions:

  • MF refactor update, including transcription
  • ECM update


GO subsets update

Pascale:

  • Deprecated a number of unused/unmaintained subsets
  • Show subset yaml files and how they are used
  • Each subset needs a maintainer

Suggestions for topics Fall 2018

Carried over from May 2018


New topics

Representing complete proteomes (added by Val)

Datasets (obtaining/maintaining complete datasets with unique identifiers)
Annotation
  • Which organisms other than cerevisiae and pombe have looked at all protein coding genes for the availability/possibility of GO annotation?
 Establish the difference  between: 
 * (1) "not in the GO database (not found); 
 * (2)  "unknown" (ND),  
 * (3) "unannotated" (no ND, and no annotation in Aspect of interest) 

(difference can be established using the complete known protein ID set for your organism and GO term mapper https://go.princeton.edu/cgi-bin/GOTermMapper)