2 April 2019 PAINT Conference Call

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Revision as of 10:02, 19 March 2019 by Pascale (talk | contribs) (Created page with "=Present= =Discussion points= ==Pipeline issues== * There are still 4 open tickets in the PAINT pipeline project: https://github.com/orgs/geneontology/projects/23 Status up...")
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Present

Discussion points

Pipeline issues

  • There are still 4 open tickets in the PAINT pipeline project:

https://github.com/orgs/geneontology/projects/23 Status update on these?

  • Duplicate annotation problem is back:

https://github.com/geneontology/go-annotation/issues/2247 PTN000163972


Curation priorities

New families and fixing GitHub tickets (40 open as of Feb 27) - UPDATE:

Tool feature requests

  • Undo
  • Links to AmiGO for all genes

Tree issues ?

PTHR10791: https://github.com/geneontology/go-annotation/issues/2210 Pascale - saw may cases where sequences from yeast and other distantly related organism seem to be misplaced- ie duplications should be calculated to be older.


Example tickets

Specificity of transporters

First issue: Questionable dispute

Second issue: questionable tree annotation

  • Review annotations to this family: PTHR43341
    • why did the curator NOT propagate 'amino acid transporter activity' ?
    • Weird propagation in a small pombe duplication node
    • No membrane annotation
    • Hardly any BP propagated
  • Could this be due to some automatic update ?