Difference between revisions of "7 Dec 2021 PAINT Conference Call"
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(Created page with "==Present== ==Agenda== ===Recuration families with IBA conflict at the leaf nodes=== IBAs are propagated to the leaf nodes even if there is experimental annotation with a...") |
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https://docs.google.com/document/d/1YpUQtmZe5elOs94_Aj2AeVax5AsIEyzKkO6ZNKz-yPg/edit?usp=sharing | https://docs.google.com/document/d/1YpUQtmZe5elOs94_Aj2AeVax5AsIEyzKkO6ZNKz-yPg/edit?usp=sharing | ||
=== How annotations with conflicting qualifiers are displayed in PAINT Matrix=== | |||
There are a few cases where there is conflicting annotations. Example PTHR43003(PTN000780612) with experimental NOT annotation for general term GO:0006284 and positive annotation for more specific term GO:0006285. In this case, annotation is displayed with pink dot so that curators can easily take note of conflicting qualifiers. | |||
*Should display be changed when curator adds annotation? | |||
Revision as of 18:31, 2 December 2021
Present
Agenda
Recuration families with IBA conflict at the leaf nodes
IBAs are propagated to the leaf nodes even if there is experimental annotation with a conflict NOT qualifier to the same gene. Anushya curated a list of nodes with conflict.
- Here is the file with nodes to be curated: https://drive.google.com/file/d/1btEkCOzoTERf-NBgN-7VBKUB86_y1unh/view?usp=sharing
- Here are the ones that have been curated with notes: https://drive.google.com/file/d/1fDfbSOXGsi_pAiXUj633nrTYpS9WiFpG/view?usp=sharing
- Here are some examples where IBAs are allowed to stay.
https://docs.google.com/document/d/1YpUQtmZe5elOs94_Aj2AeVax5AsIEyzKkO6ZNKz-yPg/edit?usp=sharing
How annotations with conflicting qualifiers are displayed in PAINT Matrix
There are a few cases where there is conflicting annotations. Example PTHR43003(PTN000780612) with experimental NOT annotation for general term GO:0006284 and positive annotation for more specific term GO:0006285. In this case, annotation is displayed with pink dot so that curators can easily take note of conflicting qualifiers.
- Should display be changed when curator adds annotation?