AmiGO 2
Introduction
AmiGO 2 is currently a development project to create the next generation of AmiGO--the current official web-based set of tools for searching and browsing the Gene Ontology database. It is still under active development, with a demonstrations site available at [1]. Please be aware that this site changes frequently and may still have downtimes (see the AmiGO_Labs page for the usual caveats).
The Backend
The Frontend
Availability
While AmiGO 2 is an open source software project, it is currently
as part of the go-dev CVS repository from the Gene Ontology
For full installation instructions, please see the installation wiki pages.
For information on maintenance and upkeep, please see the maintenance wiki pages.
What can I do using AmiGO?
What data does AmiGO use?
Availability
AmiGO is an open source software project and can be downloaded and installed as part of the go-dev CVS repository from the Gene Ontology SourceForge.net page.
For full installation instructions, please see the installation wiki pages.
For information on maintenance and upkeep, please see the maintenance wiki pages.
Browser Compatibility
AmiGO is compatible with most modern operating system/browser combinations with good CSS support, including:
- Firefox on Linux, Windows, and Mac OS X.
- Mozilla/Netscape 6 on Linux, Windows, and Mac OS X.
- IE on Windows, but NOT on Mac OS X. IE on Mac OS X does support CSS standards.
- Safari on Mac OS X.
- Konqueror on Linux.
- Opera on Linux, Windows, and Mac OS X.
In order to use all of the functionality available in this version of AmiGO, we recommend that cookies are allowed and JavaScript is turned on. The Main Window
The HTML page you view may vary slightly in details.
Components
AmiGO is made up of several interacting programs that work together to create a coherent whole.
Main components
The most used components
AmiGO's major components are the ones that are listed at the top of every page; these are the ones where your work will usually begin.
Pages from the main components
Other Components
AmiGO's other components are those that have specialized output in result of some kind of action.
Versions
The current stable version is 1.8 (tagged amigo_1_8). It is available for direct download at SourceForge.net .
Information on the upcoming version is at the 1.8 site. There is also an article and link to the current labs site.
Version numbers are as follows:
A.B.C.D
A = Major release B = Standard release (general testing) C = Bugfix release (test of fixes) D = Text fix release (minor changes that don't need testing)
The last two numbers are mostly for internal use.
Articles
Application note in Bioinformatics.