AmiGO 2 Manual: Deprecated Features: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
No edit summary
No edit summary
Line 11: Line 11:


== Term Enrichment ==
== Term Enrichment ==
We have switching over to a more abstracted system, currently using PANTHER as the engine. This functionality is available in AmiGO and will soon be available from the [http://geneontology.org GO homepage].


This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/term_enrichment
This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/term_enrichment
We will switching over to a more abstracted system, currently using PANTHER as the engine. This functionality will be available from the [http://geneontology.org GO homepage].


== Slimmer/Mapper ==
== Slimmer/Mapper ==

Revision as of 14:06, 16 May 2014

Introduction

As AmiGO 2 moves forwards and offers new features, there a few features that are deprecated and will eventually no longer be offered.

Replacements for some of these tools can be found at GO Tools Registry. The beta GO Galaxy environment is also available for some work.

GO Blast

This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/blast.cgi

Term Enrichment

We have switching over to a more abstracted system, currently using PANTHER as the engine. This functionality is available in AmiGO and will soon be available from the GO homepage.

This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/term_enrichment

Slimmer/Mapper

This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/slimmer