AmiGO 2 Manual: Deprecated Features: Difference between revisions
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= Introduction = | = Introduction = | ||
As [http://amigo2.geneontology.org AmiGO 2] moves forwards and offers new features, there a few features that are deprecated and will eventually no longer be offered. | As [http://amigo2.geneontology.org AmiGO 2] moves forwards and offers new features, there a few features that are deprecated and will eventually no longer be offered. | ||
Replacements for some of these tools can be found at [http://beta.geneontology.org/page/go-tools-registry GO Tools Registry]. The [[AmiGO_Labs | beta]] [http://galaxy.berkeleybop.org GO Galaxy] environment is also available for some work. | |||
== GO Blast == | == GO Blast == | ||
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== Term Enrichment == | == Term Enrichment == | ||
We have switched over to a more abstracted system, currently using PANTHER as the engine. This functionality is available in AmiGO and will soon be available from the [http://geneontology.org GO homepage]. | |||
This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/term_enrichment | This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/term_enrichment | ||
Latest revision as of 18:37, 6 March 2020
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Introduction
As AmiGO 2 moves forwards and offers new features, there a few features that are deprecated and will eventually no longer be offered.
Replacements for some of these tools can be found at GO Tools Registry. The beta GO Galaxy environment is also available for some work.
GO Blast
This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/blast.cgi
Term Enrichment
We have switched over to a more abstracted system, currently using PANTHER as the engine. This functionality is available in AmiGO and will soon be available from the GO homepage.
This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/term_enrichment
Slimmer/Mapper
This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/slimmer