AmiGO 2 Manual: Deprecated Features
Introduction
As AmiGO 2 moves forwards and offers new features, there a few features that are deprecated and will eventually no longer be offered.
Replacements for some of these tools can be found at GO Tools Registry. The beta GO Galaxy environment is also available for some work.
GO Blast
This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/blast.cgi
Term Enrichment
We have switching over to a more abstracted system, currently using PANTHER as the engine. This functionality is available in AmiGO and will soon be available from the GO homepage.
This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/term_enrichment
Slimmer/Mapper
This can still be used at the old AmiGO 1.x site: http://amigo1.geneontology.org/cgi-bin/amigo/slimmer