AmiGO 2 Manual: Linking: Difference between revisions
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The supported format for linking to a GO term is: | The supported format for linking to a GO term is: | ||
http://amigo.geneontology.org/term/GO:XXXXXXX | <pre>http://amigo.geneontology.org/term/GO:XXXXXXX</pre> | ||
For example: | For example: | ||
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http://amigo.geneontology.org/term/GO:0022008 | http://amigo.geneontology.org/term/GO:0022008 | ||
This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a term details page by using the parameters described in the [[AmiGO_2_Manual:_Linking#Searches]] section below. | This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a term details page by using the parameters described in the [[AmiGO_2_Manual:_Linking#Searches | Searches]] section below. | ||
= Gene Products = | = Gene Products = | ||
The supported format for linking to a GO gene product is: | |||
<pre>http://amigo.geneontology.org/gene_product/AAA:ZZZZZZZ</pre> | |||
For example: | |||
http://amigo.geneontology.org/gene_product/MGI:MGI:2177178 | |||
This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a gene product details page by using the parameters described in the [[AmiGO_2_Manual:_Linking#Searches | Searches]] section below. | |||
= Searches = | = Searches = | ||
= | == Base search pages == | ||
== Defining incoming searches == | |||
= Other pages = | |||
/amigo2/amigo/visualize | |||
/amigo2/amigo/search/ontology | |||
[[Category:AmiGO_2_Manual]] | [[Category:AmiGO_2_Manual]] | ||
Revision as of 18:52, 16 October 2013
AmiGO 2 now offers a stable set of URLs for linking. This page contains the supported methods for linking into AmiGO 2.
Users may also be interested in some of the more RESTy aspects of AmiGO 2 or the possibility of incorporating the widgets and interfaces used in AmiGO 2 into their own applications.
Terms
The supported format for linking to a GO term is:
http://amigo.geneontology.org/term/GO:XXXXXXX
For example:
http://amigo.geneontology.org/term/GO:0022008
This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a term details page by using the parameters described in the Searches section below.
Gene Products
The supported format for linking to a GO gene product is:
http://amigo.geneontology.org/gene_product/AAA:ZZZZZZZ
For example:
http://amigo.geneontology.org/gene_product/MGI:MGI:2177178
This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a gene product details page by using the parameters described in the Searches section below.
Searches
Base search pages
Defining incoming searches
Other pages
/amigo2/amigo/visualize
/amigo2/amigo/search/ontology