Revision as of 20:04, 16 October 2013

Warning: This is a proposal and should not be treated like documentation.

AmiGO 2 now offers a stable set of URLs for linking. This page contains the supported methods for linking into AmiGO 2.

Users may also be interested in some of the more RESTy aspects of AmiGO 2 or the possibility of incorporating the widgets and interfaces used in AmiGO 2 into their own applications.

Terms

The supported format for linking to a GO term is:

http://amigo.geneontology.org/term/GO:XXXXXXX

For example:

http://amigo.geneontology.org/term/GO:0022008

This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a term details page by using the parameters described in the Searches section below.

Gene Products

The supported format for linking to a GO gene product is:

http://amigo.geneontology.org/gene_product/AAA:ZZZZZZZ

For example:

http://amigo.geneontology.org/gene_product/MGI:MGI:2177178

This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a gene product details page by using the parameters described in the Searches section below.

Searches

Base search pages

Defining incoming searches

Other pages

While one can link to other pages in AmiGO 2, they are not formally considered resources and have no publicly defined variations or variables that can be passed through the URL.

These URLs may change at short notice.

@@ Line 38: / Line 38: @@
 = Other pages =
-While one can link to other pages in AmiGO 2, they are not formally considered resources and have no variations or user variables that can be passed through the URL.
+While one can link to other pages in AmiGO 2, they are not formally considered resources and have no publicly defined variations or variables that can be passed through the URL.
 * http://amigo.geneontology.org/landing

AmiGO 2 Manual: Linking: Difference between revisions