AmiGO 2 Manual: Overview: Difference between revisions
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It can be accessed online at the main installation or deployed locally. | It can be accessed online at the main installation or deployed locally. | ||
The most current installation of this software is at | The most current installation of this software is at the [http://amigo2.berkeleybop.org public beta] site. | ||
To learn more about what the Gene Ontology is and what it does, please read the introductory documentation. | To learn more about what the Gene Ontology is and what it does, please read the introductory documentation. |
Revision as of 21:26, 9 July 2013
Introduction
AmiGO 2 is a project to create the next official web-based set of tools for searching and browsing the Gene Ontology database, which consists of a controlled vocabulary of terms covering biological concepts, and a large number of genes or gene products whose attributes have been annotated using GO terms.
It can be accessed online at the main installation or deployed locally.
The most current installation of this software is at the public beta site.
To learn more about what the Gene Ontology is and what it does, please read the introductory documentation.
While we are getting the new documentation sorted out, plase take a look at the pages in Category:AmiGO_2_Manual.
More technical information about AmiGO 2 can be found here.
Components
Home
Home allows simple quick searches using autocomplete and the new GOlr backend.
Search
Search interactively searches and filters the GO data as you type. Also allows you to use a powerful search syntax (including boolean operators).
Examples workflows are also documented.
Term Page
Term pages contain common information about GO terms and their annotations.
Gene Product Page
Gene product pages contain common information about gene product and their annotations.
Grebe
The Grebe search wizard can be used to quickly answer common questions using a fill-in-the-blank approach.
Visualize
Visualizes of the GO graph. Freely make your own ontology graph, including label and color changes. Please see the documentation for more details.
GOOSE
GOOSE is the GO Online SQL Environment. Using this, users may query the GO database directly using SQL, or edit one of the already made templates.